Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq16 275 7e-69 seq69 172 6e-38 seq75 163 3e-35 seq5 141 1e-28 seq150 134 2e-26 >seq16 Length=32833667 Score = 275 bits (304), Expect = 7e-69 Identities = 253/320 (79%), Gaps = 0/320 (0%) Strand=Plus/Plus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 ||||||||||| ||||| | |||||||||||| || || ||| | | |||||| ||| Sbjct 16013825 GTGGTGACCCAAGATGAAGAAGAGCTGCTGAACACACCTGCTTCCTTAAGATGCTCTCTG 16013884 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 || | ||| |||| || ||||||| || ||||||||||||||| | | | ||| Sbjct 16013885 CAAAATTCCGAGGAAGTCTTGATTGTGACATGGCAGAAAATCAAGGCTGTAAGCCTAGAA 16013944 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||| | || || ||||| |||| ||||| || |||||||| || |||||||||||| Sbjct 16013945 AACATGGTCACCTTCAGCAAGAACCATGGGGTTGTAGTCCAGCCTGCCTATAAGGACAAG 16014004 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 ||||||||||||||||| | |||| | ||||||||||| || || |||||||||||| | Sbjct 16014005 ATAAACATCACCCAGCTGGAACTCAAGAACTCAACCATTACGTTCTGGAATACCACCCTG 16014064 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 ||||| || ||||| ||||| |||||||| || || ||||| || ||||| ||||| || Sbjct 16014065 GAGGATGAAGGGTGTTACAAGTGCCTCTTCAATACTTTTGGTTCCGGGAAGATCTCAGGA 16014124 Query 171372 GTGGCCTGCCTCACCCTCTC 171391 |||||||||||||| || Sbjct 16014125 AAAGCCTGCCTCACCCTTTC 16014144 Score = 221 bits (244), Expect = 1e-52 Identities = 218/282 (77%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 171388 TCTCNGTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCA 171447 || | || |||||||| ||||| || || ||||||||||| || |||||| | || |||| Sbjct 16017271 TCCCAGTACAGCCCACAGTGTTCCTTCACTATAAATTTTTCGAAGACCACGTAAATATCA 16017330 Query 171448 CCTGTTCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAA 171507 | || ||||||||||||||||| | ||| ||| | |||||| | || ||||||| || Sbjct 16017331 CTTGCTCTGCCAATGCCCGCCCAGCCCCTGTGATCTCCTGGAAGGTCTCTGGGTCAGGAA 16017390 Query 171508 TTGAAAACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTAC 171567 |||||||||||| ||| |||| || || | ||||| || || ||||| || ||||| | Sbjct 16017391 TTGAAAACAGTACTGAGATTCTCTCACACCCCAATGGGACCACGTCTGTCACGAGTGTCC 16017450 Query 171568 TCCAAGTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACC 171627 |||| || |||||||||||||| ||| |||| |||||||| |||||||| ||| |||| Sbjct 16017451 TCCAGGTCAAAGACCCCAAGAGCCAGGTGGGGAAGGAGGTAATCTGCCAGGTGCTACACC 16017510 Query 171628 TGGGAAATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669 |||| | | | || | | | ||| ||||| | ||| |||| Sbjct 16017511 TGGGGACTATGACCAGCGTCAGGCAAACTTTGGACAAAGGTA 16017552 >seq69 Length=12658979 Score = 172 bits (190), Expect = 6e-38 Identities = 539/825 (65%), Gaps = 41/825 (5%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 ||| || |||||||| || |||| || | ||||| || ||||| | | |||||| Sbjct 5707332 GTATTCCCTGGTGTTCGTGGTTGGTCTGCTGGGCAACGCGATGGTGGTGGTGATCCTCAC 5707391 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||| |||| ||||||| ||||||||||||||||||||||| ||||| ||||| || ||| Sbjct 5707392 AAAATACAGGAGGCTCCGGATCATGACCAACATCTTCCTGCTCAACTTGGCCATTTCTGA 5707451 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 | |||| | | ||||| || | || |||||||||| | | || ||||| |||| Sbjct 5707452 CTTGCTCTTCCTGTTCACTCTGCTGTTCTGGATTCACTAC--AGCAGGTGGAACGAGTGG 5707509 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 ||| | |||| |||||||||| | | || |||| || ||| |||| Sbjct 5707510 GTG----TTTGGCCACTTCATGTGTAAGCTCCTCTCCGGGCTTTATTACATGGGCTTGTA 5707565 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGC 8909 |||||| | | || ||||||||| |||| | ||| |||| || || || || |||| Sbjct 5707566 CAGCGAGATTTTCTTCATCATCCTGCTGACCATAGACCGGTACCTGGCCGTCGTCCACGC 5707625 Query 8910 GGTGGCTTACAGGCTGGTCCGCGTGGTACCAATAGGCATCCTCGCCAGCCTCCTGGCCTG 8969 ||| | || | ||| || | | || ||| || ||| |||| |||| Sbjct 5707626 CGTGTTCGCCCTGCGGACCCGGACCGTCACTTTTGGTATCATCATGAGCGTCCTCACCTG 5707685 Query 8970 GATTCTGGCTGTGTTGGGAACCATGCCAGAGTTTATCTTTTATGAATCCAATAATGCCAC 9029 | ||||| | | | | | || | || || ||| |||| || | ||| | |||| | Sbjct 5707686 GGGCCTGGCAGGGATAGCAGCCCTCCCTGAATTTGTCTTCCATCAGTCCCAAAATGATGC 5707745 Query 9030 AGGCAAGGGGGTCTGCCAAGCCTCCT----------ACACAGACTTT---TGGAAGGGGG 9076 | || |||| ||||| | | ||| | |||||| | Sbjct 5707746 TGAACAGTACATCTG-TTTGCCTCTTTATCCGGGAGGCCAAGAGGATAACTGGAAGCGTT 5707804 Query 9077 TTGATGTTACCAGCATGACCATGGTCACCCTCATCCTGCCTTTGCTTATCATGGCCTTCT 9136 | ||| | ||||||| ||| ||| || ||||||| |||| ||||||||| ||| Sbjct 5707805 TCCATGCTCTGAGCATGAACATCCTCAGTCTGGCCCTGCCTCTGCTCATCATGGCCGTCT 5707864 Query 9137 GCTACTGGAAAATCATCAAGGTCCTCCTCA-AGGCCCACAACAGGTCGAGAAACC---TG 9192 ||||| | ||| | | | || || | | |||| ||| | ||||| | Sbjct 5707865 GCTACGCGGGAATTGTTAGGACACTGCTGAGATGCCC-CAATA-------AAACCAAGTA 5707916 Query 9193 C-ACGCCGTCAAGCTCATTTTGATCATGGTGGTGCTTTATTTTGTCTTTTGGATCCCCTA 9251 | | ||| || ||||||||| |||| ||||| | | ||| | || |||| |||||| Sbjct 5707917 CAAGGCCATCCGGCTCATTTTTGTCATCATGGTGGTCTTTTTCATGTTCTGGACCCCCTA 5707976 Query 9252 CAACGTCCTGCTCATTTTACACACCTACCAAGAGGCCATTTTTG-GGCCAGACTGTGAAG 9310 |||| | | ||| || | | | |||| | | | |||| || ||| ||||| Sbjct 5707977 CAACCTGGTCCTCCTTCTCTCTGCTTTCCAAACGATCTTCTTTGAGGTCAG-TTGTGA-- 5708033 Query 9311 CGCGGCGCA---GGGTGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACT 9367 || | ||| || | ||| ||||| | |||| | ||| ||||||||| ||| |||| Sbjct 5708034 -GCAGAGCAAATGGCTCGACGTGGCCATGCAGGTGACAGAGGTGATCGCCTACACGCACT 5708092 Query 9368 GCTGCGTCAACCCCGTCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 ||||||| ||||||||||||||||| || || || || | ||||| Sbjct 5708093 GCTGCGTTAACCCCGTCATCTACGCTTTCGTCGGGGAGAGGTTCC 5708137 Score = 116 bits (128), Expect = 4e-21 Identities = 250/370 (68%), Gaps = 8/370 (2%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||||||| | | || || | ||||| ||||||| | | ||||| || Sbjct 5661766 GTACTCGCTGGTGTTCGTCATCGGCCTGGTGGGCAACATCCTGGTGCTGTTGGTCCTGAT 5661707 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||||||||||||||| || ||||||| ||||| ||| ||||||||||| | ||| Sbjct 5661706 GCAGTACAAGAGGCTCAAGAGTATGACCAGCATCTACCTCCTCAACCTGGCCATCTCTGA 5661647 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCA-CTCGGGGGGAACTGGTG 8788 |||||| | | ||||| || ||||| |||||| ||| | | || || |||||| Sbjct 5661646 CCTGCTTTTCCTCTTCACGCTGCCCTTCTGGATTGACTACAAGCTGAAGGACAACTGGAT 5661587 Query 8789 GGTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGT 8848 | | || || |||| || ||| | | ||| |||| || | | ||| Sbjct 5661586 TTTCAG-CGACG-GCACC-----TGCAAGCTGCTCTCGGGGCTTTATTACATAGGCTTGT 5661534 Query 8849 ACAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACG 8908 ||||||| || | || ||||||||| |||| |||||||||| || || | || ||| Sbjct 5661533 ACAGCGAGATCTTTTTCATCATCCTGCTGACGGTGGACAGGTACCTGGCCATCGTCCACG 5661474 Query 8909 CGGTGGCTTACAGGCTGGTCCGCGTGGTACCAATAGGCATCCTCGCCAGCCTCCTGGCCT 8968 | ||| | || ||| ||| ||| | | ||| ||||| |||| | ||||| Sbjct 5661473 CCGTGTTCGCCCTGCGGGTTCGCACGGTCCTCTTCGGCGTCCTCAGCAGCGCCGCGGCCT 5661414 Query 8969 GGATTCTGGC 8978 ||| ||||| Sbjct 5661413 GGAGCCTGGC 5661404 Score = 95.1 bits (104), Expect = 1e-14 Identities = 75/90 (83%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382 ||||| ||||| | |||| | ||| ||||||||| ||| ||||||||||||||||||| Sbjct 5661050 TGGACGTGGCCATGCAGGTGACGGAGGTGATCGCCTACACGCACTGCTGCGTCAACCCCG 5660991 Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 |||||||||| || ||||| || | ||||| Sbjct 5660990 TCATCTACGCCTTCGTGGGAGAGAGGTTCC 5660961 >seq75 Length=11179515 Score = 163 bits (180), Expect = 3e-35 Identities = 135/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || | ||| || | ||||||||||||||| ||||||||||| |||||||| Sbjct 1480923 CTTCAGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAA 1480864 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || |||||||||||||| || ||||||||||||| |||||| || || || |||| Sbjct 1480863 GGGCACACCCAGGCCCATGTCTCCTGACCTCTGGTACAACTGGCAGGACAGTTCACCGTT 1480804 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 ||||||| |||||||| || |||||||| || || ||||| Sbjct 1480803 CACCACGTAGAACTGGCAAAGAGCATGGCACGGAGGTAGGGCCAT 1480759 >seq5 Length=45903626 Score = 141 bits (156), Expect = 1e-28 Identities = 131/167 (78%), Gaps = 12/167 (7%) Strand=Plus/Plus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| || ||||| |||||||| |||||||||||||||||||||| Sbjct 36360289 AGGGTTACCTGGGTTGCCAAGCGTTGTCCGAGATGATCCAGTTTTACTTGGAGGAGGTGA 36360348 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| || | | ||| ||||| || |||| || |||| Sbjct 36360349 TGCCCCAGGCTGAGAA------CGAG------GACCCAGACATCAAACAGCACGTGAACT 36360396 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | ||||| |||||||| |||||||| | |||| |||||||| ||| Sbjct 36360397 CCCTGGGAGAAAAGCTGAAGACCCTCCGGCTGAGACTGCGGCGCTGT 36360443 Score = 136 bits (150), Expect = 5e-27 Identities = 130/167 (78%), Gaps = 12/167 (7%) Strand=Plus/Plus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| ||||||||| || ||||| |||||||| |||||||||||||||||||||| Sbjct 36359330 AGGGTTACCCGGGTTGCCAAGCGTTGTCCGAGATGATCCAGTTTTACTTGGAGGAGGTGA 36359389 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| || | | ||| ||||| || |||| || |||| Sbjct 36359390 TGCCCCAGGCTGAGAA------CGAG------GACCCAGACATCAAACAGCACGTGAACT 36359437 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | ||||| |||||||| |||||||| | |||| |||||||| ||| Sbjct 36359438 CCCTGGGAGAAAAGCTGAAGACCCTCCGGCTGAGACTGCGGCGCTGT 36359484 Score = 98.7 bits (108), Expect = 1e-15 Identities = 74/87 (85%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| || ||||| |||||||| ||| |||||||||| || || || ||||||| Sbjct 36362593 AGCTCCAAGAGAAAGGTGTCTACAAAGCCATGGGTGAGTTTGACATCTTCATCAACTACA 36362652 Query 178522 TAGAAGCTTACATGACAACAAAAATGA 178548 |||||||||||||||||| || |||| Sbjct 36362653 TAGAAGCTTACATGACAATGAAGATGA 36362679 >seq150 Length=2801850 Score = 134 bits (148), Expect = 2e-26 Identities = 194/269 (72%), Gaps = 6/269 (2%) Strand=Plus/Minus Query 146867 TCAAA--ATCTTGAGCTTGGGGAAGGGTCGGGGGT-TC-CTGGCCAGCTGAATTTTCAGG 146922 ||||| ||||| ||||| ||||| || | || | || ||| ||||| |||||||| Sbjct 65392 TCAAAGGATCTTAAGCTTCGGGAAAGGCCTTGGTTCTCACTGA--AGCTGCATTTTCAGC 65335 Query 146923 GGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGC 146982 |||| || || | ||||| | || || || |||| || || | ||||| | ||| Sbjct 65334 AGCTCAACATGACTCAGGTAAATATGTGCATCTCCCAAAGTATGTATGAAGTCACTGGGC 65275 Query 146983 TTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAG 147042 || ||||| || ||| ||| | ||||||||||||| | |||||||| | ||| || Sbjct 65274 TTCAGGCCTGTGGTGTGTACCATCCTGTAGGTGAGCAGGGCATAGCTGGCGACATTGGAG 65215 Query 147043 GGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCG 147102 || || ||||||||||||| || || ||| |||| | |||||| || ||||| || | Sbjct 65214 GGCACAACCAGGCCCATGTCTCCTGAGCTCCGGTATAACTGGCAGGACAGCTCACCATTT 65155 Query 147103 GCCACGTAAAACTGGCACAGGATGTGGCA 147131 ||| ||| |||||||| ||| ||||| Sbjct 65154 TCCAGGTAGAACTGGCAAAGGGAATGGCA 65126 Score = 82.4 bits (90), Expect = 9e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 147372 GGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGA 147431 |||||| | | ||||||||| |||||||||| || || ||| || || ||||| Sbjct 64903 GGACCCATTTGAGTCCCAGATTTTAACTCCCTTGGAAGACAGTTCCCAAGCGTTTGTGGA 64844 Query 147432 GCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGT 147491 ||| ||| ||||| |||| |||||||||||| ||| || | || || ||||| || Sbjct 64843 TCCCTTGATAAACCACAGCAACTCCTCCAAAACACCCTTCTAGAATACAGGTTTGGTTGT 64784 Query 147492 CAGCAGGGGGAACTGGTCCC 147511 |||||| || || | |||| Sbjct 64783 CAGCAGAGGAAATTCATCCC 64764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583120570312800