Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq62 114 1e-20 seq20960 100 3e-16 seq91 82.4 7e-11 >seq62 Length=14533578 Score = 114 bits (126), Expect = 1e-20 Identities = 143/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||| | | || || | || ||||||||||| || ||||| Sbjct 3815636 CTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 3815577 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | || | || |||||| ||| |||||| ||||| | | Sbjct 3815576 GATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACATT 3815517 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| || | |||||||||| ||||| || || || |||| || ||||| Sbjct 3815516 TTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 3815457 Query 35725 AAATATCTGCATTCTG 35740 || || |||||| || Sbjct 3815456 GAAGATTTGCATTTTG 3815441 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||| | | || || | || ||||||||||| || ||||| Sbjct 3815864 CTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAA 3815805 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | || | || ||| || ||| |||||| ||||| | Sbjct 3815804 GATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTT 3815745 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| || | |||||||||| ||||| || || || |||| || ||||| Sbjct 3815744 TTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 3815685 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 3815684 GAAGATCTGCAT 3815673 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || ||||||||||| | | || || | || ||||||||||| || ||||| Sbjct 3816092 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAA 3816033 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | ||| | || || || || |||||| ||||| | Sbjct 3816032 GATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCTTGGATCTTGGCCTTCACGTT 3815973 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| || | |||||||||| ||||| || || || |||| || ||||| Sbjct 3815972 TTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 3815913 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 3815912 GAAGATCTGCAT 3815901 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || ||||||||||| | | || || | || ||||||||||| || ||||| Sbjct 3816320 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 3816261 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | ||| | || || || || |||||| ||||| | Sbjct 3816260 GATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCTTGGATCTTGGCCTTCACGTT 3816201 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| || | |||||||||| ||||| || || || |||| || ||||| Sbjct 3816200 TTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 3816141 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 3816140 GAAGATCTGCAT 3816129 >seq20960 Length=292 Score = 100 bits (110), Expect = 3e-16 Identities = 102/132 (77%), Gaps = 1/132 (1%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| || | ||| ||| || || |||||||| || | || ||| ||| | || || Sbjct 124 CACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTC 183 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||| || ||||| ||||||| ||||||||| | ||||| || ||||||||| Sbjct 184 CAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTG 243 Query 35647 GATCTTTTGCTT 35658 |||| ||||||| Sbjct 244 GATC-TTTGCTT 254 >seq91 Length=9305606 Score = 82.4 bits (90), Expect = 7e-11 Identities = 128/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||||||||||||||| || | ||| || || | || ||||| ||||| || ||||| Sbjct 3697970 CTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAA 3698029 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| | |||||| || | ||||| ||||| ||| ||||| |||| | | Sbjct 3698030 GATCAAACTCTGCTGATCAGGAGGAATTTCTTCCTTATCCCGAATCTTGGCTTTCATACT 3698089 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | || || | ||| ||||| || ||| || || || || | |||||||| Sbjct 3698090 TTCTATTGTATCCGAGGGTTCGACCTCAACACTGAGGGTCTTTCCTGTAAGGGTTTTCAC 3698149 Query 35725 AAA 35727 ||| Sbjct 3698150 AAA 3698152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450509729635160