Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1 129 8e-25 seq53 125 1e-23 seq18 123 3e-23 >seq1 Length=84051066 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | ||| || ||||| ||||| |||||||| || || || || | Sbjct 77630839 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCT 77630898 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| ||||| | || ||||| |||||||||||||| ||||| ||||| ||||| | Sbjct 77630899 TGAGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 77630958 Query 39759 CAACAAGTCTCTCTCC 39774 | |||| | |||||| Sbjct 77630959 CCACAACCCGCTCTCC 77630974 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 |||||||| || || || || | ||||||||||| || |||||||||||||| || || Sbjct 77632831 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATCTCAGAATGGATGTTTTCCATGGC 77632890 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCT 39982 || || || || || ||||| | ||||||||||| || || ||| Sbjct 77632891 AATTTGGAAGCCATAGAAACAGCGGGCTTCAGTAATCTGAACTTCT 77632936 >seq53 Length=17124947 Score = 125 bits (138), Expect = 1e-23 Identities = 108/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| || || | ||| || ||||| |||||||||||||| ||||| | || || Sbjct 11546079 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTC 11546020 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||| ||||| |||||||||||||| || ||||| || |||||||| |||||||| || Sbjct 11546019 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCTGCAAAAGCC 11545960 Query 39761 ACAAGTCTCTCTCC 39774 || | ||| || || Sbjct 11545959 ACCACTCTTTCCCC 11545946 Score = 89.7 bits (98), Expect = 7e-13 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 39984 AACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCA 40043 ||||||| | || | ||||||||||||||| || |||||||| || |||||||| || | Sbjct 11536261 AACAAAAACCTTAC--CAAATTTTCATTCACAATGCCATCACTGGCCGCAAAAAAGGCTA 11536204 Query 40044 ATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTT 40103 ||| || |||||||| |||||||| | | | | || ||||||| | || ||| | Sbjct 11536203 ATATGTGAGAGATAAAATACTTTTCATCAGATTTAAGCTTGTTCCAGTGAGGGAGATCCT 11536144 Query 40104 TTGATA 40109 |||||| Sbjct 11536143 TTGATA 11536138 >seq18 Length=30197870 Score = 123 bits (136), Expect = 3e-23 Identities = 107/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || || || ||||| ||||| || || || |||||||| ||||| | || Sbjct 1310555 TGAAATTCTCCCGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCGATGGAC 1310614 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 ||||||||||||||||| ||||||||||| ||||| ||||| || || | | |||||| Sbjct 1310615 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 1310674 Query 68839 TTTCTAAGACCAT 68851 ||||| | ||||| Sbjct 1310675 TTTCTTATACCAT 1310687 Score = 105 bits (116), Expect = 9e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 70331 CATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTA 70390 || |||| || | ||| |||||||| ||||| || || || | || || || ||||| | Sbjct 1334195 CACCACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTGGAGACCGCAATCCTTGCTGCCA 1334254 Query 70391 GAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTAT 70450 | || ||||||||||| || | ||||| | || || ||| |||| ||||| || |||| Sbjct 1334255 GGATGGCATAGTCAGGGTGCTTGGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTAT 1334314 Query 70451 CTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 ||| ||| | ||| || || || | |||| || || || |||||||||| Sbjct 1334315 CTAGTTCCACAGTGGTGACCCCACTGTATAAGCCCTGGATTACTTTCATGG 1334365 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654 ||||||||||| || ||||| ||||||||||| || | || || ||||||| | | | Sbjct 1321430 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCTCTGGCACGCTGT 1321489 Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714 ||||| |||||||| || || || | ||| |||||||| | ||| || ||||||| || Sbjct 1321490 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCAAGGC 1321549 Query 69715 TCTAGATATATCGC 69728 || ||||| || || Sbjct 1321550 TCCAGATAAATAGC 1321563 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || ||||| || | || ||||| || || || ||||| || |||||||| ||||| Sbjct 1328052 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGATTA 1328111 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 |||||||||||||| | || ||||| | |||||| || | | || | ||||||| Sbjct 1328112 TATGTTTCAATAGCAGCATCAATATCTTCTTCATGAATCCCCACAGATACCCTCATCAAC 1328171 Query 70111 ATATGCTGAGGTCGTTC 70127 |||||||| |||| ||| Sbjct 1328172 ATATGCTGTGGTCTTTC 1328188 Score = 86.0 bits (94), Expect = 9e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576 || ||||| ||||||||||| ||||||| |||||||||||||||||||||||||| ||| Sbjct 1320746 TCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACATTCATTTGGACACATCAAAGAC 1320805 Query 69577 CA 69578 || Sbjct 1320806 CA 1320807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686476244942280