Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1 102 6e-17 seq75 95.1 1e-14 seq53 95.1 1e-14 seq213 86.0 5e-12 >seq1 Length=84051066 Score = 102 bits (112), Expect = 6e-17 Identities = 95/118 (81%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 |||||| ||||||||||| ||||| ||||| || ||||| ||||| || |||||||| Sbjct 77632947 CGGTTTAGCCAAGAAGTTCAGATTACT-GAAGCCCGCTGTTTCTATGGCTTCCAAATTGC 77632889 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||| ||||| || ||||| || ||||| ||||| || || || || ||||| |||||| Sbjct 77632888 CATGGAAAACATCCATTCTGAGATGTATAGTCTCCTCATTGACACTTACATTAAAGAT 77632831 >seq75 Length=11179515 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| | || || || ||| | || ||||| ||||| || |||||||||| Sbjct 1480757 TGATGGCCCTACCTCCGTGCCATGCTCTTTGCCAGTTCTACGTGGTGAACGGTGAACTGT 1480816 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || || ||||| || || ||||| |||||||| || || || || || ||||| || | Sbjct 1480817 CCTGCCAGTTGTACCAGAGGTCAGGAGACATGGGCCTGGGTGTGCCCTTCAACATCGCCA 1480876 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACAC 41198 | || | |||||||| || ||||| |||||| Sbjct 1480877 GCTACTCCCTGCTCACCTACATGATCGCACAC 1480908 >seq53 Length=17124947 Score = 95.1 bits (104), Expect = 1e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 44493 aaaaCCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| |||||||| |||||||| || ||||| | Sbjct 11555401 AAAATCCCTTTGATTTTATGGAAAACATTTCTTTGGAAGGGAAAACAAATTTCTTTGAGA 11555460 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| |||| ||| ||||| || Sbjct 11555461 AACGAGTTGCAGAGTATCAACG 11555482 Score = 87.8 bits (96), Expect = 1e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | |||||||| || || | |||||| ||| ||||||| ||||| |||||||| Sbjct 11531742 TTTGTCATCTTTCCAATCCAGTACCCTGACATTTGGAAAATGTATAAAAAGGCACAGGCA 11531801 Query 43760 TCATTTTGGACAGCAGAAGAAGT 43782 || || |||||||||||||| || Sbjct 11531802 TCCTTCTGGACAGCAGAAGAGGT 11531824 >seq213 Length=1129194 Score = 86.0 bits (94), Expect = 5e-12 Identities = 116/162 (72%), Gaps = 6/162 (4%) Strand=Plus/Plus Query 19540 AAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT 19599 || ||| ||||||||| || || | |||||| | ||||| ||||| ||||| ||||| Sbjct 823581 AACAGTGGTTTGCACATAATCATCTTTGATGAAATTGACGCCATCTGCAAGCAGAGAGGG 823640 Query 19600 T------CTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTA 19653 ||||| | ||||| ||||||||||| ||||| || | ||||| ||| | Sbjct 823641 AGCATGGCTGGTAGCACAGGAGTTCATGACACTGTCGTCAACCAGTTGCTGTCCAAAATT 823700 Query 19654 GACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATG 19695 || || || | || ||||| || || ||||| ||||| ||| Sbjct 823701 GATGGGGTAGAGCAGCTGAACAACATCTTAGTCATTGGTATG 823742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397211974063885