Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq93 100 3e-16 seq68 91.5 2e-13 seq1 89.7 6e-13 >seq93 Length=8979855 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| |||||||||||| ||||||||| ||| || || || || || Sbjct 6592365 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 6592306 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | | ||| | |||||| ||||||||||| |||||||| || ||| Sbjct 6592305 CCAATTGGCTGAAGCAAGTTAATGTTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACA 6592246 Query 117425 ATCGT 117429 || || Sbjct 6592245 ATAGT 6592241 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || || || | ||| || ||||| |||||||| ||||| ||||||||||| Sbjct 6592365 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 6592306 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| || | ||| | |||||| ||||| || |||||||||||||||||| Sbjct 6592305 CCAATTGGCTGAAGCAAGTTAATGTTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACA 6592246 Query 152149 ATCGT 152153 || || Sbjct 6592245 ATAGT 6592241 >seq68 Length=12770773 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| |||| || |||| |||||| |||||| || | ||||| || || Sbjct 12387179 GTGAAGATGTATCGAGGACTAGCAGAATCCTTACCACCATGCAGCCTGGTACCAAACTGA 12387238 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | || | |||||||||||| || ||| |||||||| || |||||||| |||| | Sbjct 12387239 CCAATGGGTTGCAAGAGGTTCAGATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 12387298 Query 117425 ATCGT 117429 || || Sbjct 12387299 ATGGT 12387303 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | || || | |||||| ||||| ||||| || |||||||| Sbjct 12387179 GTGAAGATGTATCGAGGACTAGCAGAATCCTTACCACCATGCAGCCTGGTACCAAACTGA 12387238 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||| | | |||||| || || ||| ||||| ||||||||||||||||| | | Sbjct 12387239 CCAATGGGTTGCAAGAGGTTCAGATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 12387298 Query 152149 ATCGT 152153 || || Sbjct 12387299 ATGGT 12387303 >seq1 Length=84051066 Score = 89.7 bits (98), Expect = 6e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| ||||||| ||||||||||| || || || ||||| Sbjct 77630841 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCTTG 77630900 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | ||| || || | ||| |||||| |||||||| ||||| || |||||||| Sbjct 77630901 AGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGGCC 77630960 Query 74892 ACAA 74895 |||| Sbjct 77630961 ACAA 77630964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546871411244600