Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq43 176 6e-39 >seq43 Length=20825300 Score = 176 bits (194), Expect = 6e-39 Identities = 271/381 (71%), Gaps = 8/381 (2%) Strand=Plus/Minus Query 13659 TATCTCGTGAGGCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTG 13718 ||| |||| |||||| || ||||||| ||||||||||| || || || || ||| Sbjct 3634821 TATATCGTAGAGCCCCTTAGTAAAGAAGAGGCAGAGTTTCCCATTGCATATTCTATAGTG 3634762 Query 13719 ATCCACCACAAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAAC 13778 | || ||||| ||||| ||| | || | ||||||||||||||||| || ||||| Sbjct 3634761 GTTCATCACAAAATCGAAATGCTTGACAGGCTCCTGAGGGCCATCTATATGCCTCAGAAT 3634702 Query 13779 CTCTACTGCGTCCACGTGGACTCCAAGTCCGGCGA--CGAGTTCATCCGGGGCGTCTCGG 13836 ||||||||| | ||||||||| || || | || | || ||| | || || Sbjct 3634701 CTCTACTGCATTCACGTGGACAGAAAATCAGAGGATTCCTTTTTGGCCGCG--GTGATGG 3634644 Query 13837 CCATCGCCAGGTGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACG 13896 ||||||| |||||| |||||| | ||||| | |||| | |||||||||| | Sbjct 3634643 GCATCGCCTCCTGCTTCAGTAACGTCTTCGTGGCCAGTCAGCTGGAGAACGTGGTGTATG 3634584 Query 13897 GCTCCTGGAGTCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCG 13956 ||| |||||||| || ||||||||||||| ||||||| ||||| | || | Sbjct 3634583 CCTCTTGGAGTCGGGTTCAGGCCGACCTCAACTGCATGCAAGACCTCTA--CCGGATGAG 3634526 Query 13957 T-CA-AGTGGAGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCT 14014 | || | ||||||||| || | || || ||||| ||||| ||||| | || |||||||| Sbjct 3634525 TGCAGACTGGAGGTACTTGATAAATCTTTGCGGCATGGATTTCCCTATTAAAACCAACCT 3634466 Query 14015 GGAGATCGTGCGGGCGCTGAA 14035 |||||| || ||| ||| || Sbjct 3634465 GGAGATTGTCCGGAAGCTCAA 3634445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658324383691520