Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_028764.1 Length=49316 Score E Sequences producing significant alignments: (Bits) Value seq449 105 2e-18 >seq449 Length=32345 Score = 105 bits (116), Expect = 2e-18 Identities = 258/378 (68%), Gaps = 11/378 (3%) Strand=Plus/Plus Query 39683 TTTTGGACTGACCCAAAGGTACAAGAGGAGTGGACACCAGAAGATAAATTTTTCTTTATA 39742 ||||||||||| || ||| || ||| || || |||||||||||||| |||||| | Sbjct 30904 TTTTGGACTGATCCTAAGATAGTAGAAGAACTTACTCCAGAAGATAAATTATTCTTTTTG 30963 Query 39743 CTTCTTCTTAGTAATCCTCAAACAACACAAATA-GGAGTTTACCAAGTAACTAAAAAACA 39801 |||| | | |||||| || || | | | | || |||| | |||||| ||||| Sbjct 30964 TATCTTTTAACTAATCCACATACTA-AGATGTGCGGTATTTATAAGATAACTATTAAACA 31022 Query 39802 ACTAGCATTTTGGATGGGGTACTCAGAAGAAAGTATAA-GAGCATTAATGGATAGATTCG 39860 | | |||| | || || || || | |||| |||| ||| | || || || Sbjct 31023 GATGGGATTTGATTTAGGTTATTCTATCGAGACAATAATGAGC-TTACTTGAAAGGTTTT 31081 Query 39861 TAAATCACCATAAGTGTATTAAATATAATCCCGATACTAGAGAAATTGCCATAAAAAACT 39920 ||| | || || |||||||||||||| || | ||| | || || ||||| | Sbjct 31082 CTAATTATTATGGGTTTATTAAATATAATCAGACAACAAAGGAACTAGCTATTAAAAATT 31141 Query 39921 GGGGCAAATATAACTTAACTAAAGGTGGTAAACCAATTATAGATTTACTTAA-TAAAGAA 39979 |||| ||||||||| | | |||||||||||||||| | ||||| || ||||| |||||| Sbjct 31142 GGGGTAAATATAACCTTAATAAAGGTGGTAAACCAGTGATAGA-TTGCTTAAGTAAAGAT 31200 Query 39980 CTCAAAGAAGTTAAAGATATTGAGT-TAATAAAATATGTAATTCCATCAATAGAAAAATC 40038 | | | ||| | |||| ||| |||| |||||| | |||| |||| ||||| Sbjct 31201 TTAGATGCAGTAACTGATA-AAAGTCTAATCAAATATATTTATCCA--AATATAAAAA-G 31256 Query 40039 AGATATAAGAAAAATATT 40056 || | || ||||| ||| Sbjct 31257 TGAAACAATAAAAAAATT 31274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157595265843372