Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_028859.1 Length=42881 Score E Sequences producing significant alignments: (Bits) Value seq449 84.2 6e-12 >seq449 Length=32345 Score = 84.2 bits (92), Expect = 6e-12 Identities = 280/428 (65%), Gaps = 12/428 (3%) Strand=Plus/Plus Query 18233 TGGTGTCGACTGGGGTTACGAGCACTATGGATCTATTGTGTTAATAGGACGAGGTATAGA 18292 ||| || ||||||||||| ||||| | || || || | | ||| | || ||| Sbjct 8624 TGGAGTGGACTGGGGTTATCAGCACAAAGGCTCAATAACTATTTTCGGAATGGATACAGA 8683 Query 18293 TGGTAACTTTTATTTTATTGAGGAGCACGCACACCAATTTAAGTTTATTGATGATTGGGT 18352 | ||| | ||| | ||||| || || || | |||| ||| || ||| | ||||| Sbjct 8684 TCATAATATCTATATGATTGAAGAACATACAAAGCAATATAAAGAAATAGATTACTGGGT 8743 Query 18353 GGTTATTGCAAAAGATATTGTATGTAGATATGGCAATATT-AATTTTTACTGC-GATACT 18410 | || |||||| || ||| || ||||| |||||| ||||||| ||| ||| | Sbjct 8744 TAAAGTAGCTAAAGATTTTATATCTAAGTATGGTAATATTCAATTTTT--TGCAGATTCA 8801 Query 18411 GCACGACCTGAATATATCACTGAATTTAGAAGACATAG-ATTACGTGCAATTAACGCTGA 18469 ||| |||| || || | || |||| || | | |||| || | | || ||| | Sbjct 8802 GCAAGACCAGAGCATGTTGCTCGTTTTAATCGAGAAGGTATTAAATGTA-TAAATGCTAA 8860 Query 18470 TAAAAGTAAACTATCGGGTGTAGAGGAAGTTGCTAAGTTGTTCAAACAAAACAAGTTACT 18529 ||||| | || | ||| |||| | |||| | || | || ||| | ||| || | Sbjct 8861 TAAAAAAGTATTAGCTGGTATAGAAGTAGTTTCCAAACTTTTAAAAGTGAGGAAGCTATT 8920 Query 18530 TGTTCTTTATGATAATATGGATAGGTTTAAGCAAGAGGTATTTAA---ATATGTTTGGCA 18586 | || || | || ||||| |||| | | |||| |||||| |||||||||| | Sbjct 8921 TTTTATTAAAGAAAATATTGATAAGATACTTGAAGA---ATTTAACCTATATGTTTGGAA 8977 Query 18587 CCCTACAAACGGAGAGCCTATAAAAGAATTTGATGACGTGTTGGACTCGTTAAGATATGC 18646 |||| ||||| || ||||| || |||||| || | || || ||||||||||| Sbjct 8978 TGAAACAACTGGAGAACCAGTAAAACAAAATGATGATGTACTAGATTCATTAAGATATGC 9037 Query 18647 CATATACA 18654 || |||| Sbjct 9038 AATTTACA 9045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137015584531182