Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_028915.1 Length=43228 Score E Sequences producing significant alignments: (Bits) Value seq449 217 4e-52 >seq449 Length=32345 Score = 217 bits (240), Expect = 4e-52 Identities = 759/1162 (65%), Gaps = 41/1162 (4%) Strand=Plus/Plus Query 17775 AGAAGTCTGGAACTGCTTTATAAACGATAGACCCAAAGTATTAATA-GCGAGTGGTGCAA 17833 |||||| | || ||| ||| || || | || || ||||||| || | ||| |||| Sbjct 7901 AGAAGTATTAAATTGCATTAGAAGAGAAAAGCCGAAGATATTAATTTGCTA-TGGAGCAA 7959 Query 17834 AGAGAGCAGGCAAAACGTATGTGTTTATCC--TGCtttttttAATGCACATAGCTACTTA 17891 |||||| || ||||| ||||| |||||| ||||||||| | |||||||||| || Sbjct 7960 TGAGAGCTGGGAAAACTTATGT-TTTATCTATTGCTTTTTTATCT-CACATAGCTAAATA 8017 Query 17892 TAAAGACAAGGGGCTTAACTTCATTATTGGAGGAGCAACGCAAGCATCTATAAGACGTAA 17951 | ||| | || || ||||| || |||||||| | || |||| | | || Sbjct 8018 TGAAGGTCAAAATAAAAATTTTATTATCGGTGGAGCAACTTATGCGAATATATGGAGAAA 8077 Query 17952 CATACTAGATGATATGGAGTTAATACTAGGTAG-AGAGTTAACACTCGATAAATCTAACG 18010 ||| || ||||| |||| | | || | | | | |||| ||| ||||| ||| Sbjct 8078 TATATTAAATGATTGGGAGACACTCTTAAGCATTAAAATTAA-ACTTCATAAAGATAATA 8136 Query 18011 CAGTCAAAATATTTGGTAATAAAGTGTATGTATTCGACGGACAAAACTCGGATGCATGGA 18070 | | |||| || ||||| | |||||||| | ||| | || | | |||||| Sbjct 8137 GTTTTGATTTATTCGGGAATAAGATTTATGTATTTGGTGGAGATAATGCCTCTTCATGGA 8196 Query 18071 AAAAAGCGCGTGGTTTTACTTCAGCAGGTGCTTTTTTAAATGAGGGAACAGCATTACACA 18130 || || | || || ||| | |||| || || | ||||| | |||||||||||| | Sbjct 8197 AAGCAGTAAGAGGATTCACTGCTACAGGAGCATTACTTAATGAAGCAACAGCATTACATA 8256 Query 18131 ATATGTTTATTAAAGAAGTGT-TCTCACGTTGT--AGTTACAAAGGCGCGAGAATATTAA 18187 ||| ||| |||||||| ||| | | | ||| || | | ||| || || | | Sbjct 8257 ATACTTTTGTTAAAGAA-TGTATTGCGAGATGTTCAGATGC--AGGAGCAGTTATTTATA 8313 Query 18188 TTGATACAAACCCCGAAAACCCAATGCATCCAGTTAAAAAAGATTACATTGATAAGAGTG 18247 | ||||| ||||| || || || | ||| ||||||| ||||| | ||||| | Sbjct 8314 TGGATACTAACCCTGATAATCCTAGCCATTTTGTTAAAACTGATTATGTAGATAAATCAG 8373 Query 18248 GTCAAC--GATTATCGAATGGAAGACTAAATATCAAAGCATTTCAATTTACTTTGTTCGA 18305 | ||| |||| ||||||| ||||||| |||||||||| |||||||||| || Sbjct 8374 G--AACTAGATTTAAAAATGGAAAGTTAAATATACAAGCATTTCATTTTACTTTGTATGA 8431 Query 18306 CAATACATTTTTAGATGAAGAATATATTGAATCGATTATAGCGAGT---ACACCAACAGG 18362 |||| |||||||||||||||||| |||| || ||||| | | || || | ||| Sbjct 8432 TAATAATTTTTTAGATGAAGAATATGTTGA---GAGTATAGAAAATGCAACTCCGATAGG 8488 Query 18363 AATGTTCACAGATCGTGACATTTATGGTAAGTGGGTTTCTGCTGAGGGTGTTGTATATAA 18422 |||||| ||| | | ||| ||| || ||||| || | ||||| ||||| ||||| Sbjct 8489 AATGTTTTTTGATAGAAATATTCTTGGAAAATGGGTATCACCCGAGGGAGTTGTGTATAA 8548 Query 18423 AGATTTCAAAGAAAAAGTTCATTACATCACAGAAGAAGAATTTAAAACTAAACAAATAAA 18482 |||||| || ||| ||| || || ||| || | ||| | ||||| Sbjct 8549 AGATTTTAATATAAATACACATGTGATAAC---TCTTCAATCTATTCCAAAAGATATAAA 8605 Query 18483 AAGG-AAATAT-----GCAGGCGTCGACTGGGGATATGAGCATTATGGTTCTATTATGGT 18536 | || || || | || || |||||||| ||| |||| | || || || | | Sbjct 8606 ATGGTTAAGATTTTGGGGTGGAGTGGACTGGGGTTATCAGCACAAAGGCTCAATAACTAT 8665 Query 18537 TGTAGCGGAA--GACTTCGACGGAAACAAGTACGTTATTGAAGAACACGCACACAGACAT 18594 | | ||||| || || || | || | ||||||||||| || | | || Sbjct 8666 TTT--CGGAATGGATACAGATCATAATATCTATATGATTGAAGAACATACAAAGCAATAT 8723 Query 18595 AAAGAAATAGATGACTGGGTAGCTATTGCAAAAGGAGTTATAAAAAGGCATGGCGATATT 18654 |||||||||||| ||||||| | || |||| ||||| | | |||| ||||| Sbjct 8724 AAAGAAATAGATTACTGGGTTAAAGTAGCTAAAGATTTTATATCTAAGTATGGTAATATT 8783 Query 18655 CTTTTTTATTGTGATACAGCCAGACCTGAACATATTGAACGATTTAGAAGAGAGAAG--A 18712 | |||| | ||| |||| ||||| || ||| ||| || ||| || |||||| | Sbjct 8784 CAATTTTTTGCAGATTCAGCAAGACCAGAGCATGTTGCTCGTTTT--AATCGAGAAGGTA 8841 Query 18713 TAAAAGCAAGATATGCTGACAAAGCTGTTATTGCTGGCATTGAAGTTATTTCTAGGTTAT 18772 | ||| | | ||||| | ||| || | ||||| || ||||| |||| | | | Sbjct 8842 TTAAATGTATAAATGCTAATAAAAAAGTATTAGCTGGTATAGAAGTAGTTTCCAAACTTT 8901 Query 18773 TCAAGTTAAATAAAATATTCATTATCAAAGAAAAAGTTAGTTTGTTTAAAGAAGAAATAT 18832 | || | | || |||| |||| |||||||| || | | | |||||| | Sbjct 8902 TAAAAGTGAGGAAGCTATTTTTTATTAAAGAAAATATTGATAAGATACTTGAAGAATTTA 8961 Query 18833 ACAACTATGTTTGGAAAGATAATGCAGACGAACCAGTTAAATTAAACGATGACACATTAG 18892 || ||||||||||| || | | | |||||||| ||| ||| ||||| | ||| Sbjct 8962 ACCTATATGTTTGGAATGAAACAACTGGAGAACCAGTAAAACAAAATGATGATGTACTAG 9021 Query 18893 ATGCGTTAAGATATGCAGTTTA 18914 || | |||||||||||| |||| Sbjct 9022 ATTCATTAAGATATGCAATTTA 9043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138125320260060