Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_029022.1 Length=46895 Score E Sequences producing significant alignments: (Bits) Value seq449 524 2e-144 seq2721 105 2e-18 >seq449 Length=32345 Score = 524 bits (580), Expect = 2e-144 Identities = 586/788 (74%), Gaps = 0/788 (0%) Strand=Plus/Plus Query 746 ATCCATTCTGATTTATCTCTTGTTCTAGTATCTTTTACTTTATTAGGATTTTTANNNNNN 805 |||||||| ||||||||| |||| |||||||| | |||| | || || Sbjct 26681 ATCCATTCACTTTTATCTCTAGTTCGTGTATCTTTAATTTTACCTATAGTTGTACTTTTC 26740 Query 806 NNNNNNNNTTTCTTCTTCCAAGTTACTTTACCTATATAAATAGGGTTTTTAAGAATAAAT 865 |||||| ||||| | || ||| |||||||||| | ||||| | ||| Sbjct 26741 TTGACCTCTTTCTTTTTCCACGATATTTTTCCTATATAAACACAATTTTTTAATATATTC 26800 Query 866 AAAACAGAACTTCTAGAAAAATTATTATTAAATTTTGTTTTATATCCTAAGTTATTGAGA 925 || ||||| || | ||||||||| ||||| |||||||| || | |||| | | Sbjct 26801 AATACAGAGCTAGATGTAAAATTATTTCCTAATTTAGTTTTATAGCCAAGACTATTTAAA 26860 Query 926 TGTTCTGCTATAGATCCAGCTCCATTACCCTCTGTATATAATTTAAAAATTAATTTTATT 985 ||| ||||||| || ||| ||| | |||| | || |||||| | ||||| Sbjct 26861 TGTGTTGCTATATTCGTAGTTCCTGAACCATTGATATAAAGTTCAAAAATCATTTTTACA 26920 Query 986 ATTTCACATTCATGTGGGTTAATTTTTAATGTTCTAGAtttttttATCCAATGTATATCA 1045 ||| | |||| |||||||| || ||||||||||| ||| |||| |||||| Sbjct 26921 ATTGGAGCTTCAGTATCATTAATTTTCAAAGTTCTAGATTTCCCTATAAAATGAATATCA 26980 Query 1046 TATCCTAGAGGTGGATTAGTTGCTATATAATTACCATCTTCTACACTTCTAACCCTACCA 1105 || || || |||||||| ||||| ||||||||||||||||| ||||||||| || ||| Sbjct 26981 TAACCAAGTGGTGGATTTGTTGCGATATAATTACCATCTTCAACACTTCTAGTTCTTCCA 27040 Query 1106 CCTTGCATTCTACGATTTATCATCTTTAATTCTTTTCTAGACATGAAGGCTTCAAATTCA 1165 ||||||||||| | || ||||| || | ||||| | ||| || ||||||||||| Sbjct 27041 CCTTGCATTCTTCTGTTAATCATTTTAAGCTCTTTACGGCTCATAAATGCTTCAAATTCT 27100 Query 1166 GTATACTCTTCATCAAAATCATCAGATAAGTCATAGGTTTTCATAGGTGTAATTATTTTA 1225 ||||| ||||| |||| |||| | || |||||||||||| | || || || ||||| Sbjct 27101 GTATATTCTTCGTCAATTTCATTATTTAGGTCATAGGTTTTGTTTGGAGTTATAATTTTC 27160 Query 1226 GTATTAGATTTTTTAAAAGTTTCTAATATAATGCCTTGGTCTTGCATATTACCTCTGCCA 1285 || || ||||||||||||| |||||||| |||||||| ||||||| ||| | || Sbjct 27161 GTTCTACTATTTTTAAAAGTTTTTAATATAACACCTTGGTCCTGCATATCACCACGTCCT 27220 Query 1286 AGTCTTTGCATGTCCATAACTAATACACCAGTATATTGTTTATTTTCAACTTCTTTTAAG 1345 || | ||||||||||||||| ||||||||| ||| |||| | ||| ||||||| ||| Sbjct 27221 AGACGTTGCATGTCCATAACCAATACACCATCATAACGTTTTTCTTCCACTTCTTGTAAA 27280 Query 1346 AGTTCTAACATTTTAGGTCTAAAAAATAAACTTTCACCAGATACTATTTCTTCTTTTATT 1405 || |||| ||||||||||||||| |||||| |||| || ||||| ||||||||||| ||| Sbjct 27281 AGCTCTAGCATTTTAGGTCTAAATAATAAATTTTCTCCTGATACAATTTCTTCTTTAATT 27340 Query 1406 TCTACTATGTTTAAttttttttCTTTAGCAAACTTTAATAATGCTTTTCTGTGTTTGGAT 1465 || || || || || |||| |||||||||| ||||| | |||||||| || || || Sbjct 27341 TCAACAATATTAAAGTTTTGAGCTTTAGCAAATTTTAAAAGAGCTTTTCTATGCTTAGAG 27400 Query 1466 AAGGTTTCACCTTCACCTAAAGTTTTTTCAAGTTCTTCATCAGCACGTGATTTTCTTAAA 1525 | ||||| ||||||||||| |||||||| | |||||||||||| | ||||||||||||| Sbjct 27401 AGAGTTTCCCCTTCACCTAATGTTTTTTCCATTTCTTCATCAGCTCTTGATTTTCTTAAA 27460 Query 1526 TAAATACA 1533 |||||||| Sbjct 27461 TAAATACA 27468 Score = 84.2 bits (92), Expect = 7e-12 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 284 ATATTTTTAGACCTTTCTAAAAAAGTATTTTCATCATATATGCCTCTCTCTAAGAAATCA 343 ||||||||| ||||||||||| | | ||||||||| || || | ||||| |||||| Sbjct 26213 ATATTTTTATTTCTTTCTAAAAATCTCTCTTCATCATAGATTCCACGTTCTAATAAATCA 26272 Query 344 AACAGTTTTAATTTTTGTTCATTAAG 369 || | ||||||||||||| ||||||| Sbjct 26273 AATAATTTTAATTTTTGTGCATTAAG 26298 >seq2721 Length=1966 Score = 105 bits (116), Expect = 2e-18 Identities = 234/346 (68%), Gaps = 44/346 (13%) Strand=Plus/Plus Query 4459 aaaactaaattaaaa------ggag--atgaaaaaaTGAATA---ATTTACAAGTTATTG 4507 |||| |||||||||| |||| || || ||||||| | |||||||| || | Sbjct 904 AAAAATAAATTAAAACACTAAGGAGGAATTTTAAGATGAATACACAATTACAAGTAATAG 963 Query 4508 ACCAACGAAATTTACTAGGAAAGAACTTCAAGGTATATGGAGATTTTCAAAACCCATTAT 4567 ||||| || | | |||||||| | || | | ||||| ||| |||| ||||||| Sbjct 964 ACCAAAGAGAAGTTTTAGGAAAGGAATTTAGAATTTATGGTGATAAAGAAAATCCATTAT 1023 Query 4568 TTTTAGCAAAAGATGTAGCTGAATGGATTGATTATCAAAAAACAAGTGAAGGGTATTATA 4627 ||||||| |||||||| || | ||||| ||| || | || || || | ||| Sbjct 1024 TTTTAGCTAAAGATGTTGCAAATTGGATAGAT-ATTAGTAATCAT----AGAGATTTA-- 1076 Query 4628 ACACTTCTAAAATGTTAAATACAGTAGATGAAGATGAAAAGGTAACTATCCCAAATAAGG 4687 |||| | | ||| || || |||||||||||| || || | Sbjct 1077 ------CTAACAAG--------AGTTGAAGATGATGAAAAGGTAG-TAGGTTTAACC--G 1119 Query 4688 ATAG---TGGTGGAA-----GTAAATTA-TTTTTAACAGAAGATGGGTTTTATGAGGTAT 4738 | | ||| |||| | || || ||||||||||||||||| ||||||| |||| Sbjct 1120 ACACCCTTGGAGGAAAACAAGAAACTTGGTTTTTAACAGAAGATGGACTTTATGAAGTAT 1179 Query 4739 TAATGCAAAGTAGAAAACCTATTGCTAAGCAATTTAAAAAGAAAGT 4784 |||||||||||||||||||||| || || ||||||||||| |||| Sbjct 1180 TAATGCAAAGTAGAAAACCTATAGCAAAACAATTTAAAAAAGAAGT 1225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149852700426618