Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq150 192 5e-44 seq75 141 8e-29 >seq150 Length=2801850 Score = 192 bits (212), Expect = 5e-44 Identities = 428/636 (67%), Gaps = 20/636 (3%) Strand=Plus/Plus Query 34217 GAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTG 34276 |||||||| |||||||| || |||| ||| | || |||||| || | |||||| ||||| Sbjct 64769 GAATTTCCTCTGCTGACAACCAAACCTGTATTCTAGAAGGGTGTTTTGGAGGAGTTGCTG 64828 Query 34277 TGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGG 34336 ||||| | | ||| |||| ||| | ||| || || ||| ||| || || |||||| Sbjct 64829 TGGTTTATCAAGGGATCCACAAACGCTTGGGAACTGTCTTCCAAGGGAGTTAAAATCTGG 64888 Query 34337 GACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCC-CATCTCGGGAGGAGGG 34395 ||| | | ||||| ||||| | |||||| || | ||| || | | || |||| Sbjct 64889 GACTCAAATGGGTCCTGAGACCTCTTGGACA-GCCGATATTCTGCAACAGAGAAGAAGGG 64947 Query 34396 CGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAG 34455 ||||| ||||| || || || || |||| | | || || | Sbjct 64948 -GACTTAGGCCCAGTTTATAATTTTCAATGGAAAATA-------CAAAG-ATAAGA---- 64994 Query 34456 CGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAA 34515 | | || ||||| || || |||| ||||| ||||| | ||||| ||||| | || Sbjct 64995 --ATTCAGATTATTCTGGTCAAGGAGTAGACCAACTGCAAAAGGTGATTGACACAATCAA 65052 Query 34516 GCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCT 34575 ||| |||||||||||| ||| | |||| | |||||| || || ||||| ||| | Sbjct 65053 AACCAACTGTGATGACAGAAGAATCATCCTGTGTGGGTGGAATCCAAAAGATCTTCCTTT 65112 Query 34576 GATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTC 34635 ||||| ||| | | ||||| |||| ||||| |||||| | | ||||| |||||||| Sbjct 65113 AATGGC--TCCTCTC-TGCCATTCCCTTTGCCAGTTCTACCTGGAAAATGGTGAGCTGTC 65169 Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695 ||||||| | || | | || ||||||||||| | | ||||| | ||| | || || Sbjct 65170 CTGCCAGTTATACCGGAGCTCAGGAGACATGGGCCTGGTTGTGCCCTCCAATGTCGCCAG 65229 Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGT 34755 || || |||||||| |||| ||| | || | || || || | || | | Sbjct 65230 CTATGCCCTGCTCACCTACAGGATGGTACACACCACAGGCCTGAAGCCCAGTGACTTCAT 65289 Query 34756 GCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGCT 34815 ||||| ||||| ||||| ||||| ||||||| || | |||| ||| || ||||| Sbjct 65290 ACATACTTTGGGAGATGCACATATTTACCTGAGTCATGTTGAGCTGCTGAAAATGCAGCT 65349 Query 34816 GCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAAT 34851 || |||| || | || ||||| |||| || || Sbjct 65350 TCAGTGAGAACCAAGGCCTTTCCCGAAGCTTAAGAT 65385 Score = 192 bits (212), Expect = 5e-44 Identities = 428/636 (67%), Gaps = 20/636 (3%) Strand=Plus/Minus Query 6494 ATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATG 6553 || || |||| ||||| || | || |||| || ||||| || ||| |||| | Sbjct 65385 ATCTTAAGCTTCGGGAAAGGCCTTGGTTCTCACTGAAGCTGCATTTTCAGCAGCTCAACA 65326 Query 6554 TGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCC 6613 || ||||||| ||||| ||||| ||||| ||||| | | || | || || || Sbjct 65325 TGACTCAGGTAAATATGTGCATCTCCCAAAGTATGTATGAAGTCACTGGGCTTCAGGCCT 65266 Query 6614 ACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCT 6673 | || | ||| |||| |||||||| || || || || | ||| | ||||| | Sbjct 65265 GTGGTGTGTACCATCCTGTAGGTGAGCAGGGCATAGCTGGCGACATTGGAGGGCACAACC 65206 Query 6674 AACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAG 6733 | ||||||||||| || | | || | ||||||||||||||| ||||| | | |||| Sbjct 65205 AGGCCCATGTCTCCTGAGCTCCGGTATAACTGGCAGGACAGCTCACCATTTTCCAGGTAG 65146 Query 6734 AATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCAC 6793 || ||||| |||| ||||| | | ||| ||||| | ||| ||||| || || |||||| Sbjct 65145 AACTGGCAAAGGGAATGGCA-GAGAGGA--GCCATTAAAGGAAGATCTTTTGGATTCCAC 65089 Query 6794 GCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGC 6853 | |||| | ||| |||||||||||| ||| || | ||||| ||||| | ||| Sbjct 65088 CCACACAGGATGATTCTTCTGTCATCACAGTTGGTTTTGATTGTGTCAATCACCTTTTGC 65029 Query 6854 AGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAG 6913 || ||||| |||| || || ||||| || | | | || || | Sbjct 65028 AGTTGGTCTACTCCTTGACCAGAATAATCTGAAT------TCTTAT-CTTTG-------T 64983 Query 6914 TGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATG-GGAACCC 6972 | |||| || || || || ||||| ||||| |||| || | | || ||| Sbjct 64982 ATTTTCCATTGAAAATTATAAACTGGGCCTAAGTC-CCCTTCTTCTCTGTTGCAGAATAT 64924 Query 6973 CCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGA 7032 | || |||||| | ||||| ||||| | | ||||||||| || || ||| ||| || Sbjct 64923 CGGC-TGTCCAAGAGGTCTCAGGACCCATTTGAGTCCCAGATTTTAACTCCCTTGGAAGA 64865 Query 7033 GAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTT 7092 || ||| | ||| |||| ||| | | |||||||||| |||||| | || ||||| Sbjct 64864 CAGTTCCCAAGCGTTTGTGGATCCCTTGATAAACCACAGCAACTCCTCCAAAACACCCTT 64805 Query 7093 CCAGTACACACGTTTCGTCGTCAGCAGCGGAAATTC 7128 | || | ||| |||| || |||||||| |||||||| Sbjct 64804 CTAGAATACAGGTTTGGTTGTCAGCAGAGGAAATTC 64769 >seq75 Length=11179515 Score = 141 bits (156), Expect = 8e-29 Identities = 128/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| ||||||||||| || || |||||||| | || ||||| |||||||| | ||| Sbjct 1480747 GATCTTCCTCTGATGGCCCTACCTCCGTGCCATGCTCTTTGCCAGTTCTACGTGGTGAAC 1480806 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || || |||||||||||| | || || | || ||||||||||| | || ||||| ||| Sbjct 1480807 GGTGAACTGTCCTGCCAGTTGTACCAGAGGTCAGGAGACATGGGCCTGGGTGTGCCCTTC 1480866 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || ||| | |||||||| ||||||||||| || Sbjct 1480867 AACATCGCCAGCTACTCCCTGCTCACCTACATGATCGCACA 1480907 Score = 141 bits (156), Expect = 8e-29 Identities = 128/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| |||||||| | ||| || || |||||||| ||||| || | ||| Sbjct 1480907 TGTGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGGCACACCCAGGCCC 1480848 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 |||||||| || | || || | |||||||||||| || || ||| | |||||||| ||| Sbjct 1480847 ATGTCTCCTGACCTCTGGTACAACTGGCAGGACAGTTCACCGTTCACCACGTAGAACTGG 1480788 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 || || | |||||||| || || ||||||||||| ||||| Sbjct 1480787 CAAAGAGCATGGCACGGAGGTAGGGCCATCAGAGGAAGATC 1480747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447980123563440