Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq31 217 1e-51 seq16 181 9e-41 seq8 161 8e-35 seq44 122 7e-23 seq150 107 2e-18 seq75 96.9 3e-15 >seq31 Length=24795140 Score = 217 bits (240), Expect = 1e-51 Identities = 386/556 (69%), Gaps = 8/556 (1%) Strand=Plus/Plus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 ||||||||||| ||||| || | || |||||||| || || || || | ||||| Sbjct 20769284 CTAAACTGTATCATCGCTGTGTCCCAGAACATGGGCATCGGCAAGAATGGGGACCTGCCC 20769343 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGACATCTTCTTC--CACT- 2256 ||||| || || | |||||||| || |||| |||| |||||| | | || || | Sbjct 20769344 TGGCCGCCGCTCAGGAATGAATTCAAGTATTTCCAAAGAATGACCACAACCTCATCAGTA 20769403 Query 2257 -GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAA 2315 || |||| |||||| | || |||||||| || ||||||||||| || |||||| || Sbjct 20769404 GGAGGTAAA-CAGAATTTGGTGATTATGGGTAGGAAGACATGGTTCTCTATTCCCAAGAA 20769462 Query 2316 -AAGCAGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACA-CCTTAAAGAGCCA 2373 || || ||||| || ||||||| ||| | |||||||||||| | ||| | || || Sbjct 20769463 GAATCAA-CCTTTAAAGGACAGAATTAATATAGTTCTCAGTAGAGAACCTCCAGGAACCT 20769521 Query 2374 CCACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGA 2433 |||| || |||| ||| |||| |||||| | ||| | || | || |||| | Sbjct 20769522 CCACAAGGAACTCATTTTCTTGCTAAAAGTCTGGATGATGCCTTAAAACTTATTGAGCAA 20769581 Query 2434 CCAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAG 2493 ||||||||| | | | |||||| | | ||||| || | || || || ||||| ||| || Sbjct 20769582 CCAGAATTAGCACATAAGGTGGACATGGTTTGGGTAGTGGGAGGCAGTTCTGTTTATAAG 20769641 Query 2494 GAGAGCATTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTT 2553 || ||| | || | || | | | || || | |||||| || |||| ||||| Sbjct 20769642 GAAGCCATGAACAGGCCAGGCCATCTTAGACTACTTGTGACAAGGCTTATGCAGGAATTT 20769701 Query 2554 GAATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTT 2613 ||| |||| |||| || |||||| || || | ||||| |||| || | |||| Sbjct 20769702 GAAAGTGACACATTTTTTCCAGAAGTTGATTTGGAGAAATATAAACTTCTCCCAGAATAC 20769761 Query 2614 CCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATAT 2673 |||||||||| |||| | || || || || || || | ||||||||||| ||||| Sbjct 20769762 CCAGGTGTTCTTTCTGATATCCAGGAGGAGAAAGGCATCAAGTACAAATTTGAAGTATAT 20769821 Query 2674 GaaaaaaaaaCATAAT 2689 || || || | |||| Sbjct 20769822 GAGAAGAACAATTAAT 20769837 >seq16 Length=32833667 Score = 181 bits (200), Expect = 9e-41 Identities = 190/250 (76%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 1281 GAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACT 1340 ||||| | ||||| |||||||| ||| | || || ||||| ||||||||||| ||| Sbjct 16013897 GAAGTCTTGATTGTGACATGGCAGAAAATCAAGGCTGTAAGCCTAGAAAACATGGTCACC 16013956 Query 1341 TTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACT 1400 || || || |||| |||||||| || ||||| || || || || || || ||||| || Sbjct 16013957 TTCAGCAAGAACCATGGGGTTGTAGTCCAGCCTGCCTATAAGGACAAGATAAACATCACC 16014016 Query 1401 GAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGG 1460 |||| | ||| | ||| |||| || || |||||||| || || |||| ||||||||| Sbjct 16014017 CAGCTGGAACTCAAGAACTCAACCATTACGTTCTGGAATACCACCCTGGAGGATGAAGGG 16014076 Query 1461 TGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGTCTA 1520 || |||||||| | || || |||||||| || |||||||| ||||||| || || || Sbjct 16014077 TGTTACAAGTGCCTCTTCAATACTTTTGGTTCCGGGAAGATCTCAGGAAAAGCCTGCCTC 16014136 Query 1521 ACCCTTTTTG 1530 ||||||| || Sbjct 16014137 ACCCTTTCTG 16014146 >seq8 Length=41820603 Score = 161 bits (178), Expect = 8e-35 Identities = 379/558 (68%), Gaps = 23/558 (4%) Strand=Plus/Plus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 |||||||| |||| || || || | || |||||||| | || || || ||| Sbjct 31894853 CTAAACTGCATTGTCGCGGTGTCCCAGAACATGGGCATCTGCAAGAACGGGGGCGTGCTG 31894912 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAA----AC-ATTTTCAAAAAATGACATCTTCTTCCA 2254 | ||| || || | |||||||| || || |||| |||| |||||| | |||||| Sbjct 31894913 TAGCCCCCGCTCAGGAATGAATTCAAGTACACTATTTCCAAAGAATGACCACATCTTCCT 31894972 Query 2255 CT--GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCAT 2312 | || || || ||| | || |||||||| || ||||||||||| || |||||| Sbjct 31894973 CATAGAACGTAAGCAAAATTTAGTGATTATGGGTAGGAAGACATGGTTCTCTATTCCCAA 31895032 Query 2313 TAA-AAGCAGGCCTTTGAAC-AACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAG 2370 || || ||| ||||| || || ||||| ||| | ||||||||| || |||||||||| Sbjct 31895033 GAAGAATCAG-CCTTTAAAGGAAAAGAATTAATTTAGTTCTCAGTTGAGACCTTAAAGAA 31895091 Query 2371 CCACCACGTGGGGCTCACTTTG-TTGCAAAAAGTATAGATCACGCTCTGGAAATTAT--A 2427 || || | | ||||| ||| |||| |||||| | ||| | || | || |||| | Sbjct 31895092 CCTCCCCAAGAAGCTCATTTTTCTTGCCAAAAGTCTGGATGATGCCTTAAAAGTTATTGA 31895151 Query 2428 ATAGGACCAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTC 2487 || | |||||| | | | ||||| | | |||||||| | || || || ||||| Sbjct 31895152 GTA--ATTGGAATTAGCAAATAAAGTGGACATGGTTTGGATAGTGGGAGGCAGTTCTGTT 31895209 Query 2488 TATGAGGAGAGCATTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAA 2547 ||| |||| | || | | | | || | | | || ||| | ||||||||| |||| Sbjct 31895210 TATAAGGAAACCACGAAGAAACCAGGCCACCTTAGACTATTTGTGACAAGGATTATGCAG 31895269 Query 2548 AAATTTGAATGTGATACATACTTC--CCAGAAATTAATCTTACCAAATACAAACAACTTA 2605 |||||||| |||| ||||||| ||||| || || | | ||| |||| | Sbjct 31895270 GAATTTGAAAGTGA--CATACTTTTTCCAGACTTTGATTTGGAGAGATATAAACTTCCCC 31895327 Query 2606 CTGAATTTCCAGGTGTTCCCTCTGCCGTGCA--AGAAGAAAATGGAATTAGATACAAATT 2663 | | || |||||| ||| |||| || || |||||||| || ||| |||||||| Sbjct 31895328 CAGTATACCCAGGTATTCTTTCTGATGTCCAGGAGAAGAAA--GGCATTGAGTACAAATT 31895385 Query 2664 TGAGATATATGaaaaaaa 2681 ||| |||||| ||| || Sbjct 31895386 TGAAGTATATGCAAAGAA 31895403 >seq44 Length=20597754 Score = 122 bits (134), Expect = 7e-23 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | ||||| || ||||||||| | ||||| || ||||||||| Sbjct 2306453 GTGGTGGAGGAGCTCTTCAGGGATGGAGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 2306512 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| ||| || | |||| || |||||| Sbjct 2306513 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGAGAGATGTCGCCCCTGGTGGACAAC 2306572 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 2306573 ATCGCCCTGTGGATGACTGA 2306592 >seq150 Length=2801850 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118456 AGTTGGAGTTTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGT 118515 || || | |||||| |||||| ||| ||| || | ||| ||||| || | |||||| Sbjct 65349 AGCTGCATTTTCAGCAGCTCAACATGACTCAGGTAAATATGTGCATCTCCCAAAGTATGT 65290 Query 118516 ATGAATTCACCAGGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAG 118575 ||||| |||| || | || ||||| ||| | ||| |||| || | || ||| Sbjct 65289 ATGAAGTCACTGGGCTTCAGGCCTGTGGTGTGTACCATCCTGTAGGTGAGCAGGGCATAG 65230 Query 118576 CTGGCTACATTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAA 118635 ||||| ||||| | || ||| |||| ||||||||| |||| ||| |||| || ||||| Sbjct 65229 CTGGCGACATTGGAGGGCACAACCAGGCCCATGTCTCCTGAGCTCCGGTATAACTGGCAG 65170 Query 118636 GAGAGCTCCCCGTTTGCAACATAAAACTG 118664 || ||||| || ||| | | || ||||| Sbjct 65169 GACAGCTCACCATTTTCCAGGTAGAACTG 65141 >seq75 Length=11179515 Score = 96.9 bits (106), Expect = 3e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || ||||| | ||| || |||||||| || | || ||||||||| | || || || Sbjct 1480919 AGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGGC 1480860 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 |||||||| ||||||||| |||| ||||||||||| ||||| || || || ||||| | Sbjct 1480859 ACACCCAGGCCCATGTCTCCTGACCTCTGGTACAACTGGCAGGACAGTTCACCGTTCACC 1480800 Query 118654 ACATAAAACTG 118664 || || ||||| Sbjct 1480799 ACGTAGAACTG 1480789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414222323808628