Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq91 104 2e-17 seq51 98.7 7e-16 seq62 95.1 8e-15 seq2 86.0 4e-12 >seq91 Length=9305606 Score = 104 bits (114), Expect = 2e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||| ||| || |||||||| || ||||| || ||| | | || || || || Sbjct 3698164 AAGATGCAACATTTTGTGAAAACCCTTACAGGAAAGACCCTCAGTGTTGAGGTCGAACCC 3698105 Query 23668 ACGGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 |||| || | |||| ||| ||| | || | | | || || |||| | || || || Sbjct 3698104 TCGGATACAATAGAAAGTATGAAAGCCAAGATTCGG-GATAAGGAAGAAATTCCTCCTGA 3698046 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| ||| |||| || ||||| ||||| ||||||||||| | ||| ||||| || || Sbjct 3698045 TCAGCAGAGTTTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTA 3697986 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| ||||| |||||||| Sbjct 3697985 CAACATTCAAAAGGAGTCCAC 3697965 >seq51 Length=18513618 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| ||||| || || ||||| || || || || ||| Sbjct 16774513 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 16774454 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | ||||| || || | || || || || Sbjct 16774453 GACACCATCGAGAATGTCAAGGCGAAGA-TCCAGGACAAGGAGGGCATCCCCCCTGACCA 16774395 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || |||||||||||||| |||||||| | ||||| || || ||||| Sbjct 16774394 GCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCTTGTCTGACTACAA 16774335 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 16774334 CATCCAGAAGGAGTCCAC 16774317 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| ||||| || || ||||| || || || || ||| Sbjct 16774969 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 16774910 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| || || | || || || || Sbjct 16774909 GACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 16774850 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || |||||||||||||| |||||||| | ||||| || || |||||| Sbjct 16774849 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCTTGTCTGACTACAAC 16774790 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 16774789 ATCCAGAAGGAGTCCAC 16774773 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| ||||| || || ||||| || || || || ||| Sbjct 16774285 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 16774226 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | ||||| || || | || || || || Sbjct 16774225 GACACCATCGAGAATGTCAAGGCGAAGA-TCCAGGACAAGGAGGGCATCCCCCCTGACCA 16774167 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || |||||||||||||| |||||||| | ||||| | || ||||| Sbjct 16774166 GCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 16774107 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 16774106 CATCCAGAAGGAGTCCAC 16774089 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| ||||| || || ||||| || || || || ||| Sbjct 16774741 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 16774682 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | ||||| || || | || || || || Sbjct 16774681 GACACCATCGAGAATGTCAAGGCGAAGA-TCCAGGACAAGGAGGGCATCCCCCCTGACCA 16774623 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || |||||||||||||| |||||||| | ||||| | || ||||| Sbjct 16774622 GCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 16774563 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 16774562 CATCCAGAAGGAGTCCAC 16774545 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | || || || || ||||| || || || || ||| Sbjct 16773829 ATGCAGATCTTCGTGAAGACCTTGACAGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 16773770 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | |||||||| || | || || || || Sbjct 16773769 GACACCATCGAGAATGTCAAGGCGAAGA-TCCAGGACAAAGAGGGCATCCCCCCTGACCA 16773711 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || |||||||||||||| |||||||| | ||||| | || ||||| Sbjct 16773710 GCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 16773651 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 16773650 CATCCAGAAGGAGTCCAC 16773633 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | ||||| || || ||||| || || || || ||| Sbjct 16774057 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 16773998 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | ||||| || || | || || || || Sbjct 16773997 GACACCATCGAGAATGTCAAGGCGAAGA-TCCAGGACAAGGAGGGCATCCCCCCTGACCA 16773939 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || |||||||||||||| |||||||| | ||||| | || ||||| Sbjct 16773938 GCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 16773879 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 16773878 CATCCAGAAGGAGTCCAC 16773861 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | ||||| || || ||||| || || || || ||| Sbjct 16775197 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 16775138 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | ||| || || || ||||| || | || || || || Sbjct 16775137 GACACCATCGAGAATGTCAAAGGGAAGATCCAGGAAAAAGAGGGCATCCCCCCTGACCAG 16775078 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || |||||||||||||| |||||||| | ||||| | || |||||| Sbjct 16775077 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 16775018 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 16775017 ATCCAGAAGGAGTCCAC 16775001 >seq62 Length=14533578 Score = 95.1 bits (104), Expect = 8e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| || || || || ||| Sbjct 3816129 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 3816188 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | || || || || |||||||| | || || || || Sbjct 3816189 GACACCATCGAAAACGTGAAGGCCAAGATCCAAGATAAAGAAGGCATCCCTCCTGACCAG 3816248 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| ||||| || |||||||| | |||||| | ||||||||| Sbjct 3816249 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 3816308 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || ||||||||||| | ||| | ||| Sbjct 3816309 ATCCAGAAAGAGTCCACTCTCCATCTGGTT 3816338 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| || || || || ||| Sbjct 3815901 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 3815960 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | || || || || |||||||| | || || || || Sbjct 3815961 GACACCATTGAAAACGTGAAGGCCAAGATCCAAGATAAAGAAGGCATCCCTCCTGACCAG 3816020 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| ||||| || ||||| || | |||||| | ||||||||| Sbjct 3816021 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCTGATTACAAC 3816080 Query 23791 ATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 3816081 ATCCAGAAAGAGTCGAC 3816097 Score = 82.4 bits (90), Expect = 5e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| || ||||| || ||||| || || || || ||||| || || || || || Sbjct 3815442 AAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 3815501 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | |||| | || || || || || || || | || ||||| Sbjct 3815502 AGTGACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCAGAC 3815561 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||| ||||| || |||||||| | |||||| | |||||| Sbjct 3815562 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTAC 3815621 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || ||||| || Sbjct 3815622 AACATCCAGAAGGAGTCGAC 3815641 >seq2 Length=60041133 Score = 86.0 bits (94), Expect = 4e-12 Identities = 138/196 (70%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 23613 GCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGA 23672 |||||| || || | ||||| | ||| || || ||| | ||||| ||||| ||| || Sbjct 38873998 GCAGATCTTTGTGGAGACCCTGATGGGCAAGACCATCTCCCTCGAGGTTGAGCCCAGTGA 38873939 Query 23673 CACTGTTGAA-ATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAAC 23731 |||| ||| || | ||| | ||| | | ||| || || | |||| || || | Sbjct 38873938 CACTAGTGAGGATGTCAAAGCCAAAG-TCCAAGCCAAGGAGGGCATTTCGCCTGACCAGC 38873880 Query 23732 AGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACA 23791 ||||| | || |||||||||||||| |||||||| | |||||| | || ||||| | Sbjct 38873879 AGCGTCTGATTTTTGCCGGCAAACAGCTGGAAGATGGCTGCACTTCATTAGACTACAATA 38873820 Query 23792 TACAAAAAGAGTCCAC 23807 || ||||||||||| Sbjct 38873819 CCCAGAAAGAGTCCAC 38873804 Score = 86.0 bits (94), Expect = 4e-12 Identities = 138/196 (70%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 23613 GCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGA 23672 |||||| || || | ||||| | ||| || || ||| | ||||| ||||| ||| || Sbjct 38875380 GCAGATCTTTGTGGAGACCCTGATGGGCAAGACCATCTCCCTCGAGGTTGAGCCCAGTGA 38875321 Query 23673 CACTGTTGAA-ATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAAC 23731 |||| ||| || | ||| | ||| | | ||| || || | |||| || || | Sbjct 38875320 CACTAGTGAGGATGTCAAAGCCAAAG-TCCAAGCCAAGGAGGGCATTTCGCCTGACCAGC 38875262 Query 23732 AGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACA 23791 ||||| | || |||||||||||||| |||||||| | |||||| | || ||||| | Sbjct 38875261 AGCGTCTGATTTTTGCCGGCAAACAGCTGGAAGATGGCTGCACTTCATTAGACTACAATA 38875202 Query 23792 TACAAAAAGAGTCCAC 23807 || ||||||||||| Sbjct 38875201 CCCAGAAAGAGTCCAC 38875186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337802072351516