Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq75 163 2e-35 seq31 95.1 1e-14 seq41 82.4 6e-11 >seq75 Length=11179515 Score = 163 bits (180), Expect = 2e-35 Identities = 135/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| ||||| || ||||||||||||||||| |||||| Sbjct 1480919 AGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGGC 1480860 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || |||||||| |||||||||||||| | |||||| || || || |||| | Sbjct 1480859 ACACCCAGGCCCATGTCTCCTGACCTCTGGTACAACTGGCAGGACAGTTCACCGTTCACC 1480800 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 ||||| ||||| || | |||||||||||||| |||||||| ||| Sbjct 1480799 ACGTAGAACTGGCAAAGAGCATGGCACGGAGGTAGGGCCATCAGA 1480755 >seq31 Length=24795140 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 114290 TCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAG 114349 || || ||||| |||| || | ||||| | | |||| |||||| | ||| || ||| Sbjct 20769507 TCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTTGATTCTTCTTGGGAATAGAG 20769448 Query 114350 AACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCTCTGTCGGAAGACGTAGCG 114409 ||||| ||||| |||||||| ||||||| ||||| ||||||| | || || || | | Sbjct 20769447 AACCATGTCTTCCTACCCATAATCACCAAATTCTGTTTACCTCCTACTGATGAGGTTGTG 20769388 Query 114410 GTCAAGGCTCGAAAGTGTTTAAAATCTTTGCAAAGTCTCACCGGATGCCACGGCAGATCT 114469 |||| | | || | || || || || | || ||| |||| ||||| || Sbjct 20769387 GTCATTCTTTGGAAATACTTGAATTCATTCCTGAG------CGGCGGCCAGGGCAGGTCC 20769334 Query 114470 CCGTTGTTCCCGATGCCCATG-TCTGGACACGCTGCCACGATACCGTTCAG 114519 || || || |||||||||||| ||||| || | || | ||||| ||| || Sbjct 20769333 CCATTCTTGCCGATGCCCATGTTCTGG-GACACAGCGATGATACAGTTTAG 20769284 >seq41 Length=21659380 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || || || ||||| |||| || | ||||| | | ||||| |||||| || || Sbjct 9946556 TTGAGGTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCCGGA 9946497 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 || |||||||| |||||||||||||| ||||||| ||||| || ||| Sbjct 9946496 ATAGAGAACCATGTCTTTCTACCCATAATCACCAAATTCTGTTTGCCT 9946449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405913828107022