Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq75 129 4e-25 >seq75 Length=11179515 Score = 129 bits (142), Expect = 4e-25 Identities = 127/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| ||| || |||||||| ||||| || ||||||||||||||||| ||||| Sbjct 1480919 AGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGGC 1480860 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || |||||||| || ||||||||||| | ||| || || || || || | Sbjct 1480859 ACACCCAGGCCCATGTCTCCTGACCTCTGGTACAACTGGCAGGACAGTTCACCGTTCACC 1480800 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 ||||| ||||| || | || ||||||||||| || ||||| || Sbjct 1480799 ACGTAGAACTGGCAAAGAGCATGGCACGGAGGTAGGGCCATCAG 1480756 Score = 82.4 bits (90), Expect = 6e-11 Identities = 114/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 27497 TGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 27556 |||| ||||| || ||||||||||| || || || || || || || | || || |||| Sbjct 1477950 TGTATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTTCTT 1477891 Query 27557 CCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT 27616 | |||| ||| || ||||||| |||| || ||| || ||||| |||||||| | Sbjct 1477890 CTCTGTTGGAGAATCCTAGGCTGTCCAAGAAGTTTCGGGACCCATTGGCATCCCAGATTT 1477831 Query 27617 TTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 | || ||||| || || || || | |||||| || || Sbjct 1477830 TCACTCCCTTGGATGACAGTTCCTTAGCGTTTGTAGATCC 1477791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369280333779887