Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_031016.1 Length=40273 Score E Sequences producing significant alignments: (Bits) Value seq449 109 1e-19 >seq449 Length=32345 Score = 109 bits (120), Expect = 1e-19 Identities = 287/430 (67%), Gaps = 11/430 (3%) Strand=Plus/Minus Query 22634 ACTATAAATCGCATATCGCAAAGAGTCAAGTACATCATCGAATAGTTTTATTGGTTCTCC 22693 ||| ||||| ||||||| || || || ||||||||||| | |||||| ||||||||| Sbjct 9047 ACTGTAAATTGCATATCTTAATGAATCTAGTACATCATCATTTTGTTTTACTGGTTCTCC 8988 Query 22694 ttttttttCATCCCAAACATATTGATAAATCTCATTAGGAAATTTATCAACTTTATCTCT 22753 || |||||| |||||||||| | | || || | | | | ||||||| || ||| | Sbjct 8987 AGTTGTTTCATTCCAAACATATAGGTTAAATTCTTCAAGTATCTTATCAATATTTTCTTT 8928 Query 22754 ACAAACAAACAACTT-ATCTTTCTTAAATCTACGAGCGACTGCTTCAACACCAGTTAAAC 22812 | || ||| | ||| || | ||||| | | | ||| |||| | ||||| ||| Sbjct 8927 AATAAAAAATAGCTTCCTCACTTTTAAAAGTTTG-GAAACTACTTCTATACCAGCTAATA 8869 Query 22813 GTGCTTTGTCTCCATTAAACGCTTCAATGTGTTCTCGTTTAAACCTATCAACATGTTCAG 22872 | ||| | |||| | || ||| |||||| ||||| | | ||||||| || | Sbjct 8868 CTTTTTTATTAGCATTTATACATTTAATACCTTCTCGATTAAAACGAGCAACATGCTCTG 8809 Query 22873 GGCGAGCAGAATCACAATAGAAGGGGACTCTTGAACCATAACGTTCTTGAATACCTTTAG 22932 | | || ||||| | | || || | || |||||| | || | |||||| Sbjct 8808 GTCTTGCTGAATCTGCA-AAAAATTGAATATT--ACCATACTTAGATATAAAATCTTTAG 8752 Query 22933 CTATATCTACCCAATAGTCAATTTCTTCATGTTGTTTTGCGTGCTCTTCGATTAAATAAG 22992 ||| | ||||| || || ||||||| || ||| |||| || ||||| || | || || Sbjct 8751 CTACTTTAACCCAGTAATCTATTTCTTTATATTGCTTTGTATGTTCTTCAATCATAT-AG 8693 Query 22993 CTGTTCCATCATCCGTTTC---TCCGATAACAACAATTGAACCCCAGTGTTCATACCCCC 23049 | || || ||| || || ||||| || | ||||| || ||| | ||| |||| Sbjct 8692 ATATT--ATGATCTGTATCCATTCCGAAAATAGTTATTGAGCCTTTGTGCTGATAACCCC 8635 Query 23050 AGTCAACACC 23059 |||| || || Sbjct 8634 AGTCCACTCC 8625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128674977093390