Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq18 123 3e-23 seq1 116 5e-21 seq53 87.8 2e-12 >seq18 Length=30197870 Score = 123 bits (136), Expect = 3e-23 Identities = 107/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| ||||| ||||| || || || |||||||| ||||| | || Sbjct 1310555 TGAAATTCTCCCGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCGATGGAC 1310614 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| ||||||| ||| |||||||| |||||||| ||||| || || | | |||||| Sbjct 1310615 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 1310674 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 1310675 TTTCTTATACCAT 1310687 Score = 120 bits (132), Expect = 4e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||| ||||| |||||||| || |||||||| ||||| Sbjct 1328052 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGATTA 1328111 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 |||||||||||||| | || || || || |||||| || || | ||| | ||||||| Sbjct 1328112 TATGTTTCAATAGCAGCATCAATATCTTCTTCATGAATCCCCACAGATACCCTCATCAAC 1328171 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 |||||||| ||||||||| || Sbjct 1328172 ATATGCTGTGGTCTTTCAGCC 1328192 Score = 111 bits (122), Expect = 2e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||||||||| |||||||| || ||||| || |||| || || |||| || | ||| Sbjct 1321430 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCTCTGGCACGCTGT 1321489 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 ||||| |||||||| ||||| || | ||| |||||||| | ||| || ||||||| || Sbjct 1321490 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCAAGGC 1321549 Query 78123 TCTAGATATATTGCCATAACTCCAGGTCG 78151 || ||||| || || | | |||||||| Sbjct 1321550 TCCAGATAAATAGCAAATGCCCCAGGTCG 1321578 Score = 86.0 bits (94), Expect = 9e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984 |||||||| ||||||||||| ||||||| ||||| ||||||||||| |||||||| ||| Sbjct 1320746 TCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACATTCATTTGGACACATCAAAGAC 1320805 Query 77985 CAGTC 77989 ||||| Sbjct 1320806 CAGTC 1320810 >seq1 Length=84051066 Score = 116 bits (128), Expect = 5e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||||| | ||| || ||||| ||||| || ||||| || || ||||| ||| Sbjct 77630841 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCTTG 77630900 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| ||||| | ||||||||| ||||||||||| || ||||| || || ||||| || Sbjct 77630901 AGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGGC 77630959 Score = 98.7 bits (108), Expect = 1e-15 Identities = 105/138 (76%), Gaps = 3/138 (2%) Strand=Plus/Plus Query 47795 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTT 47851 ||| |||||| |||| || | |||| ||| ||| | || ||||| |||||||| | Sbjct 77629329 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCCATCCT 77629388 Query 47852 TTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 47911 ||||| || || || | ||||| || || ||||| || ||||||| ||| ||||| || Sbjct 77629389 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 77629448 Query 47912 CATAAAATCAAATGGATT 47929 |||||| ||||||||||| Sbjct 77629449 CATAAAGTCAAATGGATT 77629466 >seq53 Length=17124947 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 48638 TACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACT 48697 ||| ||||| |||||||| || ||||||| ||| ||||||||||| ||||| || ||| Sbjct 11531825 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATGTCAGG 11531766 Query 48698 GTATTGGATTGGGAAAATAACAAATC 48723 ||| |||||||| || || ||||||| Sbjct 11531765 GTACTGGATTGGAAAGATGACAAATC 11531740 Score = 86.0 bits (94), Expect = 9e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 47852 TTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 47911 |||||| || | || |||||||| || ||||| ||||| |||||||| || || ||||| Sbjct 11555480 TTGATACTCTGCAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCCAAAGAAATGTTTTC 11555421 Query 47912 CATAAAATCAAATGGATTAACTGCATTATAAA 47943 |||||||||||| ||||| |||| | | ||| Sbjct 11555420 CATAAAATCAAAGGGATTTTCTGCCTGAAAAA 11555389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694231358373280