Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq51 152 4e-32 seq62 147 2e-30 seq20960 109 4e-19 seq91 109 4e-19 >seq51 Length=18513618 Score = 152 bits (168), Expect = 4e-32 Identities = 173/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| || | || |||||||| || ||| |||||| ||||||||||| || Sbjct 16774055 CATGCCTCCTCTGAGGCGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTC 16774114 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || |||| | || |||||||| || |||||||||||||| | |||||| || | Sbjct 16774115 AGACAGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGG 16774174 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| ||| |||||| ||| | | | |||||||| || || Sbjct 16774175 GGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTC 16774234 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||||||| || || ||||| ||||| ||||||||||||||||| |||||| Sbjct 16774235 CACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 16774286 Score = 150 bits (166), Expect = 1e-31 Identities = 177/234 (76%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| ||||| || || | | |||||||| || ||| |||||| ||||||||||| || Sbjct 16774739 CATGCCCCCCCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTC 16774798 Query 44167 -GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 | | || | |||| | || |||||||| || |||||||||||||| | |||||| || | Sbjct 16774799 AGACAAGGT-GCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAG 16774857 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGAT 44284 || | || ||||| ||| |||||| || | | |||| | |||||||| || Sbjct 16774858 GGGGGATGCCCTCCTTGTCCTGGATCTTC-GCCTTGACGTTCTCGATGGTGTCACTGGGC 16774916 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||||||||| || || ||||| ||||| ||||||||||||||||| |||||| Sbjct 16774917 TCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 16774970 Score = 149 bits (164), Expect = 5e-31 Identities = 172/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| ||||| || || | | |||||||| || ||| |||||| ||||||||||| || Sbjct 16774511 CATGCCCCCCCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTC 16774570 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || |||| | || |||||||| || |||||||||||||| | |||||| || | Sbjct 16774571 AGACAGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGG 16774630 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| ||| |||||| ||| | | | |||||||| || || Sbjct 16774631 GGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTC 16774690 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||||||| || || ||||| ||||| ||||||||||||||||| |||||| Sbjct 16774691 CACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 16774742 Score = 147 bits (162), Expect = 2e-30 Identities = 174/233 (75%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| ||||| || || | | |||||||| || ||| |||||| ||||||||||| || Sbjct 16774283 CATGCCCCCCCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTC 16774342 Query 44167 -GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 | | || | |||| | || |||||||| || |||||||||||||| | |||||| || | Sbjct 16774343 AGACAAGGT-GCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAG 16774401 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATT 44285 || | || ||||| ||| |||||| ||| | | | |||||||| || | Sbjct 16774402 GGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCT 16774461 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||||||| || || ||||| ||||| ||||||||||||||||| |||||| Sbjct 16774462 CCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 16774514 Score = 143 bits (158), Expect = 2e-29 Identities = 171/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| || | | |||||||| || ||| |||||| ||||||||||| || Sbjct 16773827 CATGCCTCCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTC 16773886 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || |||| | || |||||||| || |||||||||||||| | |||||| || | Sbjct 16773887 AGACAGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGG 16773946 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| ||| |||||| ||| | | | |||||||| || || Sbjct 16773947 GGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTC 16774006 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||||||| || || ||||| ||||| | ||||||||||||||| |||||| Sbjct 16774007 CACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCATG 16774058 Score = 143 bits (158), Expect = 2e-29 Identities = 173/233 (74%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| ||||| || || | | |||||||| || ||| |||||| ||||||||||| || Sbjct 16774967 CATGCCCCCCCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTC 16775026 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || |||| | || |||||||| || |||||||||||||| | |||||| || | Sbjct 16775027 AGACAGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGG 16775086 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || || |||||| |||||| ||| | ||| | |||||||| || | Sbjct 16775087 GGGGATGCCCTCTTTTTCCTGGATCTTC-CCTTTGACATTCTCGATGGTGTCACTGGGCT 16775145 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||||||| || || ||||| ||||| | ||||||||||||||| |||||| Sbjct 16775146 CCACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCATG 16775198 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 ||||| |||| | || |||||||| || ||| |||||| ||||||||||| || | Sbjct 16773603 CCCCCCCTCAAGCGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 16773662 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || |||| | || |||||||| || |||||||||||||| | |||||| || | || Sbjct 16773663 AGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 16773722 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | || || || ||| |||||| ||| | | | |||||||| || |||||| Sbjct 16773723 ATGCCCTCTTTGTCCTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 16773782 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||| || || ||||| || || | ||||||||||||||| |||||| Sbjct 16773783 TCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTCACGAAGATCTGCATG 16773830 >seq62 Length=14533578 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | || |||||||| || || |||||| |||||||||||||| Sbjct 3815675 CATACCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATC 3815616 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || ||||||||||| || |||||||| | | |||||| |||| Sbjct 3815615 AGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGG 3815556 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| ||| ||||| ||||| || | |||||||| || || Sbjct 3815555 GGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTC 3815496 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||| || || ||||| || || ||||||||||||||||||||||| Sbjct 3815495 CACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCAT 3815445 Score = 138 bits (152), Expect = 8e-28 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | || |||||||| || || |||||| |||||||||||||| Sbjct 3815903 CATACCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATC 3815844 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || ||||||||||| || |||||||| | | |||||| |||| Sbjct 3815843 AGAAAGAGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGG 3815784 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || || || ||| ||||| ||||| || | |||||||| || || Sbjct 3815783 GGGGATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTC 3815724 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||| || || ||||| || || ||||||||||||||||| ||||| Sbjct 3815723 CACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 3815673 Score = 132 bits (146), Expect = 3e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | || |||||||| || || ||| || |||||||||||||| Sbjct 3816131 CATACCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATC 3816072 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || ||||||||||| || |||||||| | | |||||| || | Sbjct 3816071 AGAAAGAGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGG 3816012 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | ||||| || || ||||| ||||| || | |||||||| || || Sbjct 3816011 AGGGATGCCTTCTTTATCTTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTC 3815952 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||| || || ||||| || || ||||||||||||||||| ||||| Sbjct 3815951 CACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 3815901 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || ||||| | | ||||| || || ||| ||| || |||||||||||||| | Sbjct 3816355 CCACCCCTCAGACGAAGAACCAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAA 3816296 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || ||||||||||| || |||||||| | | |||||| || | ||| Sbjct 3816295 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 3816236 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | ||||| || || ||||| ||||| || | |||||||| || |||||| Sbjct 3816235 ATGCCTTCTTTATCTTGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACC 3816176 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| || || ||||| || || ||||||||||||||||| ||||| Sbjct 3816175 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 3816129 >seq20960 Length=292 Score = 109 bits (120), Expect = 4e-19 Identities = 129/172 (75%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| || | | ||||||||| || || ||| || ||||||||||| || Sbjct 103 CATCCCACCTCTGAGACGGAGCACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAGTC 162 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || |||| | || ||||||||||| |||||||||||||| | |||||| || | Sbjct 163 AGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGG 222 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTC 44277 ||| | |||||||| ||| ||||| ||||| | |||| | |||||||| Sbjct 223 AGGAATGCCTTCCTTGTCCTGGATCTT-TGCTTTGACGTTCTCGATGGTGTC 273 >seq91 Length=9305606 Score = 109 bits (120), Expect = 4e-19 Identities = 156/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 |||||||||| || ||||| || ||||||||| |||||||| || | | || Sbjct 3697948 AGTCTCAACA--AGATGAAG--TGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGT 3698003 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || ||||| ||||| || ||||||||||||| ||||||||| | ||| | ||||| Sbjct 3698004 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACTCTGCTGATCAGGAGGAATTTCTTCC 3698063 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| ||||| |||| || |||| || || | || ||| ||||| || | Sbjct 3698064 TTATCCCGAATCTTGGCTTTCATACTTTCTATTGTATCCGAGGGTTCGACCTCAACACTG 3698123 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | |||||||| || ||||| ||||| || |||||| Sbjct 3698124 AGGGTCTTTCCTGTAAGGGTTTTCACAAAATGTTGCAT 3698161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359769376806609