Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq62 156 1e-32 seq51 145 2e-29 seq20960 131 4e-25 seq9 104 6e-17 seq131 98.7 2e-15 seq75 84.2 5e-11 seq14 84.2 5e-11 >seq62 Length=14533578 Score = 156 bits (172), Expect = 1e-32 Identities = 161/209 (77%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| |||||||| || ||| Sbjct 3816132 CAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 3816189 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||| ||||| || ||||| || || |||||||| |||||||| ||||||| Sbjct 3816190 ACACCATCGAAAACGTGAAGGCCAAGATCCAAGATAAAGAAGGCATCCCTCCTGACCAGC 3816249 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | |||||| | ||||| ||| Sbjct 3816250 AGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACA 3816309 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTT 178130 |||| ||||| || || || ||||| ||| Sbjct 3816310 TCCAGAAAGAGTCCACTCTCCATCTGGTT 3816338 Score = 145 bits (160), Expect = 2e-29 Identities = 167/222 (75%), Gaps = 7/222 (3%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| |||| |||||||| || || || || || || |||||||| |||| Sbjct 3815437 AGGTCAAAATGC---AAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGG 3815493 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 |||| || ||| |||||||||| || || || ||||| ||||| || || || || Sbjct 3815494 TGGA--GCCCAGTGACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCAT 3815551 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 ||| || |||||||| | || ||||| || || || ||||| |||||||| | ||||| Sbjct 3815552 CCCCCCAGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCT 3815611 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | | ||||| ||| |||| || || || || ||||| || || Sbjct 3815612 TTCTGATTACAACATCCAGAAGGAGTCGACCCTGCACCTGGT 3815653 Score = 140 bits (154), Expect = 8e-28 Identities = 157/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| |||||||| || ||| Sbjct 3815676 CAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 3815733 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||| ||||| || ||||| ||||| ||||| || ||||| || ||||||| Sbjct 3815734 ACACCATCGAAAACGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCAGACCAGC 3815793 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| || ||||| | |||||| | ||||| ||| Sbjct 3815794 AGAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCTGATTACAACA 3815853 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| || || Sbjct 3815854 TCCAGAAGGAGTCGACCCTGCACCTGGT 3815881 >seq51 Length=18513618 Score = 145 bits (160), Expect = 2e-29 Identities = 158/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | ||||| || || |||||||| |||||||| || ||| Sbjct 16773826 CAGATCTTCGTGAAGACCTTGACAGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 16773769 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| ||||||||||| || ||||| || ||||||| Sbjct 16773768 ACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAAGAGGGCATCCCCCCTGACCAGC 16773709 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| ||||| |||||||| |||||||| | || || | || || ||| Sbjct 16773708 AGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 16773649 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| || || Sbjct 16773648 TCCAGAAGGAGTCCACTCTGCACCTGGT 16773621 Score = 145 bits (160), Expect = 2e-29 Identities = 166/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| |||||||| || ||| Sbjct 16774282 CAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 16774225 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| |||||||| || || ||||| || ||||||| Sbjct 16774224 ACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGC 16774165 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| ||||| |||||||| |||||||| | || || | || || ||| Sbjct 16774164 AGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 16774105 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || ||||| || || || | |||||| Sbjct 16774104 TCCAGAAGGAGTCCACTCTGCACCTGGTCCTGCGCCTCAGA 16774064 Score = 143 bits (158), Expect = 6e-29 Identities = 160/209 (77%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| |||||||| || ||| Sbjct 16774966 CAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 16774909 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| |||||||| || || ||||| || ||||||| Sbjct 16774908 ACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGC 16774849 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAAC 178100 | | | ||||| ||||| |||||||| |||||||| | || |||| | || || ||| Sbjct 16774848 AGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCAC-CTTGTCTGACTACAAC 16774790 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| || || Sbjct 16774789 ATCCAGAAGGAGTCCACTCTGCACCTGGT 16774761 Score = 140 bits (154), Expect = 8e-28 Identities = 159/209 (76%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| |||||||| || ||| Sbjct 16774510 CAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 16774453 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| |||||||| || || ||||| || ||||||| Sbjct 16774452 ACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGC 16774393 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAAC 178100 | | | ||||| ||||| |||||||| |||||||| | || |||| | || || ||| Sbjct 16774392 AGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCAC-CTTGTCTGACTACAAC 16774334 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| || || Sbjct 16774333 ATCCAGAAGGAGTCCACTCTGCACCTGGT 16774305 Score = 140 bits (154), Expect = 8e-28 Identities = 157/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| |||||||| || ||| Sbjct 16774738 CAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 16774681 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| |||||||| || || ||||| || ||||||| Sbjct 16774680 ACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGC 16774621 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| ||||| |||||||| |||||||| | || || | || || ||| Sbjct 16774620 AGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 16774561 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| || || Sbjct 16774560 TCCAGAAGGAGTCCACTCTGCACCTGGT 16774533 Score = 140 bits (154), Expect = 8e-28 Identities = 157/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| |||||||| || ||| Sbjct 16775194 CAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 16775137 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| |||||| ||||| ||||| ||||| || ||||| || ||||||| Sbjct 16775136 ACACCATCGAGAATGTCAAAGGGAAGATCCAGGAAAAAGAGGGCATCCCCCCTGACCAGC 16775077 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| ||||| |||||||| |||||||| | || || | || || ||| Sbjct 16775076 AGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 16775017 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| || || Sbjct 16775016 TCCAGAAGGAGTCCACTCTGCACCTGGT 16774989 Score = 136 bits (150), Expect = 1e-26 Identities = 164/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| |||||||| || ||| Sbjct 16774054 CAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 16773997 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| |||||||| || || ||||| || ||||||| Sbjct 16773996 ACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGC 16773937 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| ||||| |||||||| |||||||| | || || | || || ||| Sbjct 16773936 AGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 16773877 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || ||||| || || | | |||||| Sbjct 16773876 TCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGA 16773836 >seq20960 Length=292 Score = 131 bits (144), Expect = 4e-25 Identities = 140/183 (77%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 177962 CCTCGAGGTGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAA 178019 ||| ||||| || || ||| |||||||||||||||||||| |||||| |||||||| Sbjct 292 CCTTGAGGTCGA--GCCCAGTGACACCATCGAGAACGTCAAAGCAAAGATCCAGGACAAG 235 Query 178020 GAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGA 178079 ||||| || ||||| |||||||| | | ||||| |||||||| ||||| |||||||| Sbjct 234 GAAGGCATTCCTCCTGACCAGCAGAGGTTGATCTTTGCCGGAAAGCAGCTGGAAGATGGG 175 Query 178080 AGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 | || || | || || ||| |||| ||||| || || ||||| || || | | ||| Sbjct 174 CGCACCCTGTCTGACTACAACATCCAGAAAGAGTCTACCCTGCACCTGGTGCTCCGTCTC 115 Query 178140 AGA 178142 ||| Sbjct 114 AGA 112 >seq9 Length=38035322 Score = 104 bits (114), Expect = 6e-17 Identities = 151/213 (71%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACC 177986 ||||||||||||||||| | || || || ||||| || ||||| ||| ||| | || Sbjct 32381076 ATTTTCGTGAAAACTCTTATGGGGAAGACCATCACTCTTGAGGTTGAACCTTCAAATACA 32381017 Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 || || || || || |||||||||| | |||||| | ||| || ||||| || Sbjct 32381016 ATAGAAAATGTGAAGACCAAGATTCAGG----ATAAGGAACTCTTCCTGATCAGCAGAGA 32380961 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAA 178106 | ||||| || || || || || ||||||||| | ||| | || || ||| | ||| Sbjct 32380960 CCGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTT----GACTACAACATTCAA 32380905 Query 178107 AAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || || || || | |||||||| ||| ||||| Sbjct 32380904 AAGGAGTCCACTCCCCATCTTGTGTTGGGACTC 32380872 >seq131 Length=4233177 Score = 98.7 bits (108), Expect = 2e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCAC-AGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGA 177982 || |||||| ||||||| | | ||||| | | ||||| |||||||| ||| || || Sbjct 287889 CAGATTTTCATGAAAACCCATATGAGGAAGATC-ATCACTCTCGAGGTTGAACCCTTGGA 287831 Query 177983 CACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 || || || || || || ||||||||||| || |||||| ||||| || ||||| Sbjct 287830 TACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGAAAGGAACTCCTCCTGATCAGCA 287771 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 |||| |||||| | | || || || ||||||||| ||| | | || | || | | Sbjct 287770 CAGACTGATCTTCTCTCGCAAGCAACTGGAAGATGGACATACTTTATCTGACTGTAGCAT 287711 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || |||||| | ||| |||| Sbjct 287710 TCAAAAGGAGTCCACTCTTCATCTTCTGTTGCGACT 287675 >seq75 Length=11179515 Score = 84.2 bits (92), Expect = 5e-11 Identities = 149/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACC 177986 |||| |||| ||||||| | | | || ||||| |||||||||||| ||| || || Sbjct 10257291 ATTTCCGTGGAAACTCTTAGGGTGAGGACCATCACTCTCGAGGTGGAACCCTCGGATACA 10257350 Query 177987 ATCGAGAACGTCAAACAA-AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACG 178045 || | || || ||| ||||||||||| || |||| ||| ||||| | ||||| | Sbjct 10257351 ATAGGAAATGTTAAAGGCCAAGATTCAGGATAAGGAAGAAATTCCTCCTGTTCAGCAGAG 10257410 Query 178046 ACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCA 178105 ||| ||| | || || | || | ||||||||| | ||| || || ||| | || Sbjct 10257411 ACTGATCCTTGCTGGCAGGCA-ATTGAAGATGGA--CATCCTT--TGACTACAACATTCA 10257465 Query 178106 AAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||| || || | || ||||| || |||||||| Sbjct 10257466 AAAGGAGTCCATTCTTCATCTCGTGTTGAGACT 10257498 >seq14 Length=35124889 Score = 84.2 bits (92), Expect = 5e-11 Identities = 141/202 (70%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || | || ||| | | |||||| ||||| |||| ||| Sbjct 6335033 CAGATCTTTGTGAAGACCCTGATGGGCAAAGCCACCACCCTTGAGGTC--AAGCCCAGTG 6335090 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||| |||||||||||| || || || |||||||| || | ||| || | ||||| Sbjct 6335091 ACACCACTGAGAACGTCAAAGTCAAAATCCAAGACAAAGAGGGCACCCCACCTGTCCAGC 6335150 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | || || || | |||||||| || | ||| ||||| | || || || Sbjct 6335151 AGCATCCGATTTTTGCGGACAAACAGCTGGAGGCTGGCCACACTCTGTCAGACTACAATA 6335210 Query 178102 TCCAAAAAGAATCAACACTGCA 178123 |||| ||||| || || ||||| Sbjct 6335211 TCCAGAAAGAGTCCACCCTGCA 6335232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202954245302138