Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq694 147 2e-30 >seq694 Length=2958536 Score = 147 bits (162), Expect = 2e-30 Identities = 321/473 (68%), Gaps = 7/473 (1%) Strand=Plus/Plus Query 18870 CAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATTAAAACAAACCCAGAAAGCCGA 18929 |||||| | || || ||||||| || || || ||||| ||||| ||| || | || Sbjct 59820 CAAGGAGTAGACCAACTGCAAAAGGTGATTGACACAATCAAAACCAACTGTGATGACAGA 59879 Query 18930 CGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGTACTACCTCCATGT 18989 |||| || | | ||||||||||| ||| | || ||||||| || |||| || Sbjct 59880 AGAATCATCCTGTGTGGGTGGAATCCAAAAGATCTTCCTTTAATGG--CT-CCTCTCTGC 59936 Query 18990 CACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAGA 19049 || | | || ||||| ||| | | ||| ||||| | |||||||| |||||| ||| Sbjct 59937 CATTCCCTTTGCCAGTTCTACCTGGAAAATGGTGAGCTGTCCTGCCAGCTATACCGGAGC 59996 Query 19050 TCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTAC 19109 || || || |||||||| | || || | ||| | | | ||||| || || |||||| Sbjct 59997 TCAGGAGACATGGGCCTGGTTGTGCCCTCCAATGTCACCAGCTATGCCCTGCTCACCTAC 60056 Query 19110 ATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTTAATTCATACAATGGGGGATGCA 19169 | | | || ||||| || || || | || || || ||||| |||| |||||| Sbjct 60057 AGGATGGTACACACCACAGGCCTGAAGCCCAGTGACTTCATACATACTTTGGGAGATGCA 60116 Query 19170 CATATTTACTTGAATCATATAGATGCT-TTAAAAGTGCAGCTAGCTCGATCCCCAAAACC 19228 ||||||||| ||| |||| | || ||| | ||| ||||||| || |||| || Sbjct 60117 CATATTTACCTGAGTCATGTTGA-GCTGCTGAAAATGCAGCTTCAGTGAGAACCAAGGCC 60175 Query 19229 TTTTCCTTGCCTTAAAATTATTCGAAATGTAACAGA-TATAAACGACTTTAAATGGGACG 19287 ||| || ||||| || || |||| || ||| || | ||||| || | | Sbjct 60176 TTTCCCGAAGCTTAAGATCCTTTGAAAAGT-TGAGACAATTGATGACTTCAAGGTTAAAG 60234 Query 19288 ATTTTCAGCTTGATGGATATAATCCACAccccccccTAAAAATGGAAATGGCT 19340 | |||||| |||| || || ||||| |||| | ||||||||||||||||| Sbjct 60235 ACTTTCAGGTTGAGGGGTACAATCCTCACCATACTATAAAAATGGAAATGGCT 60287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399496798815555