Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq1033 468 4e-127 seq578 372 2e-98 seq670 325 3e-84 seq550 123 2e-23 seq489 87.8 1e-12 >seq1033 Length=8840225 Score = 468 bits (518), Expect = 4e-127 Identities = 452/579 (78%), Gaps = 1/579 (0%) Strand=Plus/Minus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| || || |||||| ||||||||||||||||||||||||||||| || | |||| Sbjct 4779630 AAAACACCTTCACATTAATTGTTCTTCTCATATACTTCAAATTTGTACTTGATGCCTTTC 4779571 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGA 4074 || || || | || ||||||||||| ||| |||||| | |||||| |||||||| | | Sbjct 4779570 TCCTCCTGGATATCAGAAAGAACACCTGGGTATTCTGGGAGAAGTTTATATTTCTCCAAA 4779511 Query 4075 TCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGT 4134 |||| |||||||||||| ||||||| |||||| || ||||| | ||| ||||||| ||| Sbjct 4779510 TCAACTTCTGGAAAAAATGTGTCACTTTCAAATTCCTGCATAAGCCTTGTCACAAGTAGT 4779451 Query 4135 TTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAG 4194 |||||| || ||| |||| ||||| ||||| |||||||| ||||| | || ||| Sbjct 4779450 CTAAGATGGCCTGGCCTGTTCATGGCTTCCTTATAAACAGAACTGCCTCCCACTACCCAA 4779391 Query 4195 ACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAA 4254 |||||||| || |||| |||||||||||| || || |||||||||| |||||||| | | Sbjct 4779390 ACCATGTCCACCTTATGTGCTAATTCTGGTTGCTCAATAAGTTTTAAGGCATCATCCAGA 4779331 Query 4255 CTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTA-GTTCCTTGCTGAGAACAAC 4313 || ||||| | |||||||| || |||||| | |||| | |||| | |||||||| | Sbjct 4779330 CTTTTAGCAAGAAAATGAGTTCCTTGTGGAGGTTCCTGGAGGTTCTCTACTGAGAACTAT 4779271 Query 4314 ATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACC 4373 |||||||||| | |||||||| | ||||||| ||||| |||||||| ||||| |||| Sbjct 4779270 ATTAATTCTGTCCTTTAAAGGTTGATTCTTCTTGGGAATAGAGAACCATGTCTTCCTACC 4779211 Query 4374 CATAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATG 4433 ||||||||| |||||||||||| || ||| || || || || |||||||||||||||| Sbjct 4779210 CATAATCACCAAATTCTGTTTACCTCCTACTGATGAGGTTGTGGTCATTCTTTGGAAATA 4779151 Query 4434 TTTAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTT 4493 || || |||||| | || ||||| |||| || || | ||||| ||||||||||| Sbjct 4779150 CTTGAATTCATTCCTGAGCGGCGGCCAGGGCAGGTCCCCATTCTTGCCGATGCCCATGTT 4779091 Query 4494 TTGAGCTACAGCAACAATGCAGTTTAGTGCTTGAACCAT 4532 || | |||| | || |||||||| | ||||||| Sbjct 4779090 CTGGGACACAGTGATGATACAGTTTAGCGGACGAACCAT 4779052 Score = 154 bits (170), Expect = 1e-32 Identities = 168/223 (75%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 26950 GAACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTTCTCTAGCCTAAATG 27009 |||||||||| || || || || ||||| |||||||| ||||||||||| |||| || | Sbjct 3394250 GAACAATGGGGGTGACACAGGTACAGCCCACAGTCACCAGCATCTTCTCCAGCCGGAAGG 3394191 Query 27010 AATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATCTCTTGTTGGATAGGGACTG 27069 | | || ||| | || | | | |||| || | ||||| || ||||| ||||| | Sbjct 3394190 AGTGGGGACAGTGCCGAGACTCCCTTCGCAGAACCAAGATCTCCTGCTGGATGGGGACGG 3394131 Query 27070 AGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAAGTAGCGACACTTTG 27129 |||||||||||| |||||| ||||| |||| ||| ||||| || ||| | | ||||| | Sbjct 3394130 AGTTCATGTGGTGGTCTACCTTCCCTTCAGTATTGACACAGCCCCAGTGGAGGCACTTGG 3394071 Query 27130 CTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172 | ||||| |||||||| || ||||| || | || ||||| || Sbjct 3394070 CCTCCCAGATCACAGAAGGGTATCTCTCGGGGTCCTCATTCCG 3394028 >seq578 Length=7006945 Score = 372 bits (412), Expect = 2e-98 Identities = 429/572 (75%), Gaps = 8/572 (1%) Strand=Plus/Plus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| |||||| ||||||||||||||||||||| ||| | |||||| || || |||| Sbjct 5991959 ATTAATCATTCTTTGCATATACTTCAAATTTGTACTCAATGCCTTTCTCCTCCTGGACAT 5992018 Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAA 4087 |||||||| || ||| ||| || |||||| ||| |||| | |||||| ||||||| Sbjct 5992019 CAGAAAGAATACCTGGGTATACTGGGGGAAGTTTATATCTCTCCAAATCAAAGTCTGGAA 5992078 Query 4088 AAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATG 4147 ||| |||||| |||||| || ||||| ||||| |||||||| ||| |||| | || || Sbjct 5992079 AAAGTATGTCACTTTCAAATTCCTGCATAATCCTTGTCACAAATAGTCTAAGGTGGCCTG 5992138 Query 4148 GATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTT 4207 | | || | | ||| ||||| |||||||| ||||| | |||||| |||||||| |||| Sbjct 5992139 GTTTCTTCGTGGTTTCCTTATAAACAGAACTGCCTCCCACTATCCAAACCATGTCCACTT 5992198 Query 4208 TATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTA-AA 4266 ||||||||||||| | || ||| |||||| |||||||| | ||| || || | || Sbjct 5992199 TATTTGCTAATTCCAATTACTCAATAACTTTTAAGGCATCATCCAGACTTTTGGCAAGAA 5992258 Query 4267 AAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTC-TGCC 4325 ||||||||| || ||| | || || || || |||||||| | |||||||| | | Sbjct 5992259 AAATGAGCTTCTTGGGGAGGTTCTTTAAGGTCTCAACTGAGAACTAAATTAATTCTTTTC 5992318 Query 4326 TTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAA 4385 ||||||||| | ||||||| ||||| |||||||| ||| | |||||||||||||||| Sbjct 5992319 CTTTAAAGGCTGATTCTTCTTGGGAATAGAGAACCATGTCGTCCTACCCATAATCACTAA 5992378 Query 4386 ATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAAT-GT----TTAAAA 4440 ||| || ||| | || || || | || |||||||||||||||| || || || Sbjct 5992379 ATTTTGCTTACGTTCTA-TGAGGAAGATGTGGTCATTCTTTGGAAATAGTGTACTTGAAT 5992437 Query 4441 TCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTGAGCT 4500 |||||| | || ||| | ||| | || | |||| ||||||||||| || | Sbjct 5992438 TCATTCCTGAGCGGGGGCTACAGCACGCCCCCGTTCTTGCAGATGCCCATGTTCTGGGAC 5992497 Query 4501 ACAGCAACAATGCAGTTTAGTGCTTGAACCAT 4532 || || |||||||||||||| | ||||||| Sbjct 5992498 ACCGCGACAATGCAGTTTAGGGGAAGAACCAT 5992529 >seq670 Length=9189287 Score = 325 bits (360), Expect = 3e-84 Identities = 404/550 (73%), Gaps = 5/550 (1%) Strand=Plus/Plus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| ||||| |||||| || | | ||| ||||||||||| ||| ||| |||||| Sbjct 5286254 AAAACACATTCACATTAATTGTTATCTTTATACACTTCAAATTTATACATAACACTTTTT 5286313 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGA 4074 || || || ||| ||||||||||| ||| |||||| | |||||| ||||||| | | Sbjct 5286314 TCCTCCTGGACACCAGAAAGAACACCTGGGTATTCTGGGAGAAGTTTACATTTCTCCAAA 5286373 Query 4075 TCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGT 4134 |||| || ||||||||| |||| | |||||| || |||||||| || || ||| ||| Sbjct 5286374 TCAATTTATGGAAAAAATGTGTTGCTTTCAAATTCCTGCATGATTCTTGTTACAGCTAGT 5286433 Query 4135 TTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAG 4194 || ||| || ||| | |||||| ||| ||||| ||||||| ||||| | | |||| Sbjct 5286434 CTAGGATGGCCTGGCTTGTTCATAGTTTCCTTATAAGCAGAACTGCCTCCCACTGTCCAA 5286493 Query 4195 ACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAA 4254 |||| ||| || || |||| |||||||| || | || ||||||| ||||||| | | Sbjct 5286494 ACCACGTCCAC-TTCTTTGTTAATTCTGATTGCTTAATACGTTTTAAGTCATCATCCAGA 5286552 Query 4255 CTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACA 4314 || || |||| ||||||||||| |||| | | ||||| ||||| | || ||||| | Sbjct 5286553 CTTTTGGCTAGAAAATGAGCTCCTTGTGAAGGTTCCTTGAGTTCTCTACTTAGAACTGGA 5286612 Query 4315 TTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCC 4374 ||||||||| | |||||||| | | |||||| |||| |||| || ||||| ||||| Sbjct 5286613 TTAATTCTGTCCTTTAAAGGTCAGCTCTTCTAGGGAAGAGAGAGTCATGTCTTCCTACCC 5286672 Query 4375 ATAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGT 4434 |||||||| |||||||||||| | | | | || || || ||| |||| |||||| Sbjct 5286673 ATAATCACAAAATTCTGTTTACC---TTCTGCTGAGGTTGTGGTCCTTCTCCGGAAATTC 5286729 Query 4435 TTAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTT 4494 ||||| |||||| | | | ||||| || | ||| | | ||||| ||||||| || Sbjct 5286730 TTAAATTCATTCCTGA-ACGGGGCCAGGGTAGGTTTCTGTTCTTGCCGTTGCCCATCTTC 5286788 Query 4495 TGAGCTACAG 4504 || | |||| Sbjct 5286789 TGGGACACAG 5286798 >seq550 Length=32697773 Score = 123 bits (136), Expect = 2e-23 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 ||||| |||||||| ||||| | || ||| |||||||| ||||||| |||||||||||| Sbjct 9743147 TTATAAACAGAACTGCCTCCCACTACCCAAACCATGTCCACTTTATGTGCTAATTCTGGT 9743088 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284 || || ||||||| ||| |||||||| | ||| || || | ||||||||||| |||||| Sbjct 9743087 TGCTCAGTAAGTTGTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCTTGTGGA 9743028 Query 4285 AGCTCC 4290 | ||| Sbjct 9743027 GGTTCC 9743022 Score = 120 bits (132), Expect = 2e-22 Identities = 92/109 (84%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| || || | |||||||| | |||||||||| | |||||||| || |||||||| || Sbjct 9736948 CTTGAGGTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGG 9736889 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| |||||| ||||||||||||| |||||||||||| || Sbjct 9736888 AATAGAGAACCATGTCTTTCTACCCATAATCACCAAATTCTGTTTACCT 9736840 Score = 100 bits (110), Expect = 2e-16 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| || || |||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 9752474 AAAACACCTTCACATTAATTGTTCTTCTCATATACTTCAAATTTGTACTTAATGCTTTTC 9752415 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATAT 4047 || || || | || ||||||||||| ||| ||| Sbjct 9752414 TCCTCCTGGATATCAGAAAGAACACCTGGGTAT 9752382 Score = 96.9 bits (106), Expect = 3e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| |||||||| | ||||| |||||||||||| ||||||| |||||| || ||||| Sbjct 9746619 AAGTTTATATTTCTCCAAATCAATTTCTGGAAAAAATGTGTCACTTTCAAACTCCTGCAT 9746560 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTT 4166 ||||| |||||||| ||| ||| | || ||| |||| ||||| || Sbjct 9746559 AATCCTTGTCACAAATAGTCTAACGTGGCCTGGCCTGTTCATGGCTTCCTT 9746509 >seq489 Length=2104609 Score = 87.8 bits (96), Expect = 1e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| |||||||| || ||||||||||||||||| ||||| || || || | ||| |||| Sbjct 945265 CTTTGTATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTT 945324 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | ||||||| | || || || | || || || || || ||||| |||||||| | Sbjct 945325 CTTCTCTGTTGGAGAATCCTAGGCTGTCCAAGAAGTTTCGGGACCCATTGGCATCCCAGA 945384 Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTAGATCC 102195 | | ||| || | ||| || || || || |||||||| Sbjct 945385 TTTTCACTCCCTTGGATGACAGTTCCTTAGCGTTTGTAGATCC 945427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361244688334229