Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq702 248 1e-60 seq489 168 8e-37 seq1085 147 3e-30 seq694 145 9e-30 >seq702 Length=8706000 Score = 248 bits (274), Expect = 1e-60 Identities = 595/891 (67%), Gaps = 17/891 (2%) Strand=Plus/Plus Query 9472 CCCGCCCTGTATCTGCTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGATT 9531 ||| | |||||| || ||||| | |||| || ||||||| | |||||| | Sbjct 4931071 CCCCCACTGTATTCCCTGGTGTTCGTGGTTGGTCTGCTGGGCAACGCGATGGTGGTGGTG 4931130 Query 9532 ATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCA 9591 || ||| || ||||| || | || | | | || ||||| || ||| | |||||||| Sbjct 4931131 ATCCTCACAAAATACAGGAGGCTCCGGATCATGACCAACATCTTCCTGCTCAACTTGGCC 4931190 Query 9592 ATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTAT 9651 || ||||||||||| || || || ||| ||| || ||||| ||||| | | | || Sbjct 4931191 ATTTCTGACTTGCTCTTCCTGTTCACTCTGCTGTTCTGGATTCACTACA---GCAGGTGG 4931247 Query 9652 CATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCA 9711 | || ||| || || | | ||||||| || ||| || | | ||||||| Sbjct 4931248 AACGAGTGGGTGTTCGGCCACTTCATGTGTAAGCTCCTCTCCGGGCTTTATTACATGGGC 4931307 Query 9712 CTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTC 9771 |||||||| || | || | |||||||||||| || ||||| |||| || || || ||| Sbjct 4931308 TTGTACAGCGAGATTTTCTTCATCATCCTGCTGACCATAGACCGGTACCTGGCCGTCGTC 4931367 Query 9772 TATGCTGTAACTGCTTTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTATGT 9831 | || || || || || | || || || | ||| || | | | || Sbjct 4931368 CACGCCGTGTTCGCCCTGCGGACCCGGACCGTCACTTTTGGTATCATCATGAGCGTCCTC 4931427 Query 9832 ACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAGAT 9891 |||||| ||||||||| | |||||||||||||| |||| ||| |||| || Sbjct 4931428 ACCTGGGGCCTGGCAGGGATAGCAGCCCTCCCTGAATTTGTCTTCCATCAGTCCCAAAAT 4931487 Query 9892 GACAATGGTAGGGTTCAG-TGTGATCCTTACTACCCAGAGATGTCTACAA-ATGTTTGGA 9949 || || | || || ||| ||| || |||| || | | | | || |||| Sbjct 4931488 GATGCTGA-ACAGTACATCTGTTTGCCTCTTTATCCAG-GAGGCCAAGAGGATAACTGGA 4931545 Query 9950 GGCGCGCCCACGTTGCAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGG 10009 ||| ||| | | | ||| || | ||||| ||||||||||||| |||| Sbjct 4931546 AGCGTTTCCATGCTCTGAGCATGAACATCCTCAGTCTGGCCCTGCCTCTGCTCATCATGG 4931605 Query 10010 CTGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACA 10069 | ||||||||| | |||| | || | |||| |||| |||||| || | ||||||| Sbjct 4931606 CCGTCTGCTACGCGGGAATTGTTAGGACACTGCTGAGATGCCCCAATAAAACCAAGTACA 4931665 Query 10070 AGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACA 10129 |||||||| ||||||| |||||||||||||||| || ||| | || ||||| ||||||| Sbjct 4931666 AGGCCATCCGGCTCATTTTTGTCATCATGGTGGTCTTTTTCATGTTCTGGACCCCCTACA 4931725 Query 10130 ACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTTAACCTGCAGTGTGCATTGA 10189 || | || ||||| || ||| | || || | | |||||| || || | ||| Sbjct 4931726 ACCTGGTCCTCCTTCTCTCTGCTTTCCAAACGA-TCTTCTT----TGAGGTCAGTTGTGA 4931780 Query 10190 GC--AGTAACT---TGGACATGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTG 10244 || || || | | || |||| ||| | | ||| | | |||||||| ||||| Sbjct 4931781 GCAGAGCAAATGGCTCGATGTGGCCATGCAGGTGACAGAGGTGATCGCCTACACGCACTG 4931840 Query 10245 TTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAGAAGACACCTGTACCA 10304 ||| | ||||| || |||||||| ||||| ||||||| ||| | ||||| || Sbjct 4931841 CTGCGTTAACCCCGTCATCTACGCTTTCGTCGGGGAGAGGTTCCGGGAGCACCTCAGACA 4931900 Query 10305 CTTCTTCCACACCTACGTGGCCATCTACCTCTGCAAGTACATCCCCTTCCT 10355 |||||||| || ||||||||| | |||| |||| |||||||| ||||| Sbjct 4931901 CTTCTTCCGCAGGCACGTGGCCACCAACCTGGGCAAATACATCCCGTTCCT 4931951 Score = 248 bits (274), Expect = 1e-60 Identities = 595/891 (67%), Gaps = 17/891 (2%) Strand=Plus/Plus Query 176358 CCCGCCCTGTATCTGCTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGATT 176417 ||| | |||||| || ||||| | |||| || ||||||| | |||||| | Sbjct 4931071 CCCCCACTGTATTCCCTGGTGTTCGTGGTTGGTCTGCTGGGCAACGCGATGGTGGTGGTG 4931130 Query 176418 ATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCA 176477 || ||| || ||||| || | || | | | || ||||| || ||| | |||||||| Sbjct 4931131 ATCCTCACAAAATACAGGAGGCTCCGGATCATGACCAACATCTTCCTGCTCAACTTGGCC 4931190 Query 176478 ATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTAT 176537 || ||||||||||| || || || ||| ||| || ||||| ||||| | | | || Sbjct 4931191 ATTTCTGACTTGCTCTTCCTGTTCACTCTGCTGTTCTGGATTCACTACA---GCAGGTGG 4931247 Query 176538 CATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCA 176597 | || ||| || || | | ||||||| || ||| || | | ||||||| Sbjct 4931248 AACGAGTGGGTGTTCGGCCACTTCATGTGTAAGCTCCTCTCCGGGCTTTATTACATGGGC 4931307 Query 176598 CTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTC 176657 |||||||| || | || | |||||||||||| || ||||| |||| || || || ||| Sbjct 4931308 TTGTACAGCGAGATTTTCTTCATCATCCTGCTGACCATAGACCGGTACCTGGCCGTCGTC 4931367 Query 176658 TATGCTGTAACTGCTTTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTATGT 176717 | || || || || || | || || || | ||| || | | | || Sbjct 4931368 CACGCCGTGTTCGCCCTGCGGACCCGGACCGTCACTTTTGGTATCATCATGAGCGTCCTC 4931427 Query 176718 ACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAGAT 176777 |||||| ||||||||| | |||||||||||||| |||| ||| |||| || Sbjct 4931428 ACCTGGGGCCTGGCAGGGATAGCAGCCCTCCCTGAATTTGTCTTCCATCAGTCCCAAAAT 4931487 Query 176778 GACAATGGTAGGGTTCAG-TGTGATCCTTACTACCCAGAGATGTCTACAA-ATGTTTGGA 176835 || || | || || ||| ||| || |||| || | | | | || |||| Sbjct 4931488 GATGCTGA-ACAGTACATCTGTTTGCCTCTTTATCCAG-GAGGCCAAGAGGATAACTGGA 4931545 Query 176836 GGCGCGCCCACGTTGCAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGG 176895 ||| ||| | | | ||| || | ||||| ||||||||||||| |||| Sbjct 4931546 AGCGTTTCCATGCTCTGAGCATGAACATCCTCAGTCTGGCCCTGCCTCTGCTCATCATGG 4931605 Query 176896 CTGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACA 176955 | ||||||||| | |||| | || | |||| |||| |||||| || | ||||||| Sbjct 4931606 CCGTCTGCTACGCGGGAATTGTTAGGACACTGCTGAGATGCCCCAATAAAACCAAGTACA 4931665 Query 176956 AGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACA 177015 |||||||| ||||||| |||||||||||||||| || ||| | || ||||| ||||||| Sbjct 4931666 AGGCCATCCGGCTCATTTTTGTCATCATGGTGGTCTTTTTCATGTTCTGGACCCCCTACA 4931725 Query 177016 ACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTTAACCTGCAGTGTGCATTGA 177075 || | || ||||| || ||| | || || | | |||||| || || | ||| Sbjct 4931726 ACCTGGTCCTCCTTCTCTCTGCTTTCCAAACGA-TCTTCTT----TGAGGTCAGTTGTGA 4931780 Query 177076 GC--AGTAACT---TGGACATGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTG 177130 || || || | | || |||| ||| | | ||| | | |||||||| ||||| Sbjct 4931781 GCAGAGCAAATGGCTCGATGTGGCCATGCAGGTGACAGAGGTGATCGCCTACACGCACTG 4931840 Query 177131 TTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAGAAGACACCTGTACCA 177190 ||| | ||||| || |||||||| ||||| ||||||| ||| | ||||| || Sbjct 4931841 CTGCGTTAACCCCGTCATCTACGCTTTCGTCGGGGAGAGGTTCCGGGAGCACCTCAGACA 4931900 Query 177191 CTTCTTCCACACCTACGTGGCCATCTACCTCTGCAAGTACATCCCCTTCCT 177241 |||||||| || ||||||||| | |||| |||| |||||||| ||||| Sbjct 4931901 CTTCTTCCGCAGGCACGTGGCCACCAACCTGGGCAAATACATCCCGTTCCT 4931951 Score = 122 bits (134), Expect = 1e-22 Identities = 226/327 (69%), Gaps = 6/327 (2%) Strand=Plus/Minus Query 176877 TTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGC 176936 ||||||||||| | ||| ||||||||| | || | || | ||| | ||||| Sbjct 4891974 TTGCCTCTGCTGGTCATGATCGTCTGCTACACCGAGATCGTAAGGATTCTGCTCAGGCGA 4891915 Query 176937 CCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTT 176996 |||| | |||||||| ||| ||| || | || ||||| ||||||||| | | || ||| Sbjct 4891914 CCCAACGAGAAGAAGGCCAAAGCCGTCCGCCTGATCTTCGTCATCATGATCGTCTTCTTT 4891855 Query 176997 GTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTT 177056 | || ||||| || |||||| | | | || | ||| | || || | |||||| || Sbjct 4891854 CTCTTCTGGACCCCTTACAACCTGGCCATGCTGGTCTCTGCTTTCCAAGACACCCTT-TT 4891796 Query 177057 AACCTGC-AGTGT--GCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACA 177113 ||| | ||||| ||| ||||| | ||||| |||| ||| | | || | Sbjct 4891795 CACCGACGAGTGTCGGCA--GAGCAAGCAGCTGGACGTGGCCATGCAGGTGACGGAGGTG 4891738 Query 177114 GTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTT 177173 | |||||||| ||||| ||| ||||||| || |||||||| |||||||| |||| ||| Sbjct 4891737 ATCGCCTACACGCACTGCTGCGTCAACCCCGTCATCTACGCCTTCGTGGGAGAGAGGTTC 4891678 Query 177174 AGAAGACACCTGTACCACTTCTTCCAC 177200 | || ||||| ||| | |||||| Sbjct 4891677 CGCAGGTACCTGCGCCAGCTGTTCCAC 4891651 Score = 122 bits (134), Expect = 1e-22 Identities = 226/327 (69%), Gaps = 6/327 (2%) Strand=Plus/Minus Query 9991 TTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGC 10050 ||||||||||| | ||| ||||||||| | || | || | ||| | ||||| Sbjct 4891974 TTGCCTCTGCTGGTCATGATCGTCTGCTACACCGAGATCGTAAGGATTCTGCTCAGGCGA 4891915 Query 10051 CCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTT 10110 |||| | |||||||| ||| ||| || | || ||||| ||||||||| | | || ||| Sbjct 4891914 CCCAACGAGAAGAAGGCCAAAGCCGTCCGCCTGATCTTCGTCATCATGATCGTCTTCTTT 4891855 Query 10111 GTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTT 10170 | || ||||| || |||||| | | | || | ||| | || || | |||||| || Sbjct 4891854 CTCTTCTGGACCCCTTACAACCTGGCCATGCTGGTCTCTGCTTTCCAAGACACCCTT-TT 4891796 Query 10171 AACCTGC-AGTGT--GCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACA 10227 ||| | ||||| ||| ||||| | ||||| |||| ||| | | || | Sbjct 4891795 CACCGACGAGTGTCGGCA--GAGCAAGCAGCTGGACGTGGCCATGCAGGTGACGGAGGTG 4891738 Query 10228 GTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTT 10287 | |||||||| ||||| ||| ||||||| || |||||||| |||||||| |||| ||| Sbjct 4891737 ATCGCCTACACGCACTGCTGCGTCAACCCCGTCATCTACGCCTTCGTGGGAGAGAGGTTC 4891678 Query 10288 AGAAGACACCTGTACCACTTCTTCCAC 10314 | || ||||| ||| | |||||| Sbjct 4891677 CGCAGGTACCTGCGCCAGCTGTTCCAC 4891651 >seq489 Length=2104609 Score = 168 bits (186), Expect = 8e-37 Identities = 134/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 ||||| |||| ||| |||| ||||||||| ||||||||||||||||| |||||||||||| Sbjct 942549 AGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGGC 942608 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || ||||| |||||||| || || | |||||||| ||||||||| || || ||| | || Sbjct 942609 ACACCCAGGCCCATGTCTCCTGACCTCTGGTACAACTGGCAGGACAGTTCACCGTTCACC 942668 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 |||||||||||||| || ||||| || || |||||||| Sbjct 942669 ACGTAGAACTGGCAAAGAGCATGGCACGGAGGTAGGGCCAT 942709 >seq1085 Length=18888332 Score = 147 bits (162), Expect = 3e-30 Identities = 128/157 (82%), Gaps = 3/157 (2%) Strand=Plus/Plus Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141 ||||||| ||| |||| || |||||| || |||||||| |||||||||||||| | | Sbjct 2186490 CAGCGCCGCAGTCTCAGCCGGAGGGTCTTCAGCTTTTCTCCCAGGGAGTTCACGTGCTG- 2186548 Query 138142 TTTTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACTGG 138201 ||| || || | | | |||||| |||||||||||||||||||||| |||||||||| Sbjct 2186549 -TTTGATG-TCTGGGTCCTCGTTCTCAGCCTGGGGCATCACCTCCTCCAAGTAAAACTGG 2186606 Query 138202 ATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238 |||||||| |||| || ||||| ||||||||||||| Sbjct 2186607 ATCATCTCGGACAACGCTTGGCAACCCAGGTAACCCT 2186643 Score = 113 bits (124), Expect = 5e-20 Identities = 82/95 (86%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 137922 TCAGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACTC 137981 |||| |||||||||| | |||||||| || ||||||||||| ||||||||||||||||| Sbjct 2184242 TCAGATTTTCATCTTCATTGTCATGTAAGCTTCTATGTAGTTGATGAAGATGTCAAACTC 2184301 Query 137982 GCTCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016 | |||||| |||||||| ||||| || ||||||| Sbjct 2184302 ACCCATGGCTTTGTAGACACCTTTCTCTTGGAGCT 2184336 Score = 93.3 bits (102), Expect = 5e-14 Identities = 134/182 (74%), Gaps = 8/182 (4%) Strand=Plus/Plus Query 138297 AAAGAAGGTCTTTACCCTGCTGAAGGCGGCCCTGAGCTCGTGGAGCATGTGGGGCAGGCT 138356 |||||| ||||| ||| ||| |||||| || | |||||| |||||||||| |||||||| Sbjct 2187757 AAAGAAAGTCTTCACCTTGCCGAAGGCAGCTCGGAGCTCTCGGAGCATGTGCGGCAGGCT 2187816 Query 138357 GGTGGGCAATGTAGG-GCAGTCGTCCCCAGACTCACTGTCATATT-TGTTGTC-GGCCCA 138413 | | || || || ||||| |||| ||||| | || | | ||| | | ||| | Sbjct 2187817 GACTGAGAA-GTGGGTGCAGTTGTCCTCAGAC--AGGGTGCTCTGGTGTCGGCTGGCTCC 2187873 Query 138414 CACCCCGGCCAGGAGAACCAGGCAACACAGCAGCGATGCCCTGAACATGGCTAA--TCTG 138471 ||||||||||||| |||||| ||||||| || | || ||| |||||| || |||| Sbjct 2187874 TACCCCGGCCAGGAAGACCAGGAAACACAGAAGTGCTGGGCTGGGCATGGCGAAGCTCTG 2187933 Query 138472 CC 138473 || Sbjct 2187934 CC 2187935 >seq694 Length=2958536 Score = 145 bits (160), Expect = 9e-30 Identities = 234/333 (70%), Gaps = 4/333 (1%) Strand=Plus/Minus Query 145566 GTGGGGGTGGTAGCCCTCCAGCGCAAAGTCCTCCGCCCTGAAGTCATCTATGTCCTCCAC 145625 ||| || | ||| ||||| | | |||||| | || |||||||||| || ||| || Sbjct 60263 GTGAGGATTGTACCCCTCAACCTGAAAGTCTTTAACCTTGAAGTCATCAATTGTCTCAAC 60204 Query 145626 CCGCCTCAGGATCCTGAGCCT-GGGAAAGGGCCGGGGGCTC-CTGGTCAGCTGGAGCTTC 145683 | |||||| | ||| | |||||||| | || ||| ||| ||||| | ||| Sbjct 60203 TTTTCAAAGGATCTTAAGCTTCGGGAAAGGCCTTGGTTCTCACTGA--AGCTGCATTTTC 60146 Query 145684 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCG 145743 || |||| || || | ||||| | || || || |||| || |||||||| | | Sbjct 60145 AGCAGCTCAACATGACTCAGGTAAATATGTGCATCTCCCAAAGTATGTATGAAGTCACTG 60086 Query 145744 GGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTG 145803 |||| ||||| ||| ||| | | | ||||||| ||||||| ||||||| | ||| Sbjct 60085 GGCTTCAGGCCTGTGGTGTGTACCATCCTGTAGGTGAGCAGGGCATAGCTGGTGACATTG 60026 Query 145804 AAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCG 145863 ||||||| |||| |||||||| || |||| | |||| ||||||||||| ||||| || Sbjct 60025 GAGGGCACAACCAGGCCCATGTCTCCTGAGCTCCGGTATAGCTGGCAGGACAGCTCACCA 59966 Query 145864 CCCGCCACGTAGAACTGGCACAGGAGGTGGCAG 145896 ||| |||||||||||| ||| |||||| Sbjct 59965 TTTTCCAGGTAGAACTGGCAAAGGGAATGGCAG 59933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590065890955160