Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq702 264 1e-65 seq727 215 6e-51 seq1373 150 2e-31 seq536 122 1e-22 >seq702 Length=8706000 Score = 264 bits (292), Expect = 1e-65 Identities = 265/343 (77%), Gaps = 1/343 (0%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| ||||| | | | | ||| | ||||| |||||||||||||| Sbjct 7443500 AGCAGGGCTTCGATGTCAGGCTCAATGTCGATGGTTGGAAAGCGGCGGCTGTACCTGCGC 7443559 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || ||| || || | ||||||| ||||||||| ||||||||||| ||||||||||| Sbjct 7443560 ACAGGCACACCATCTGGGCCCACCAGGAACTTCTCAAAGTTCCAGGCGACGTCGTTGCGA 7443619 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 |||||||||||||||| |||| || ||||| ||| ||||| | |||||| || Sbjct 7443620 CACACTGGAGACCAGGTGATGAACTTCGGGTCAGTCATGAGCGCAGTGGCGTCGTCACTG 7443679 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 || || ||||| |||| || |||||||||||||| || || ||| || || || ||| Sbjct 7443680 GGGGCAGGCAGAGCCTGGCGCAGGAAGGCGAAGAGGGGGTGCGCCTGCGCGCCATTTACC 7443739 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 ||||||||||| || ||| | ||||| |||||||| ||| ||||| ||||||| ||| Sbjct 7443740 TCGCACTTCTCAAAAAGCGTGAAGTTGGGCTCGAACCCGCCGCCAGGTCGGACGTACTTA 7443799 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG-GTGA 83398 |||||| || |||||| | || | ||||| ||||| |||| Sbjct 7443800 AGGGAATTCAGGATCTCTTCGTTTTTAGCGTTCTCCTGCGTGA 7443842 >seq727 Length=5185825 Score = 215 bits (238), Expect = 6e-51 Identities = 332/467 (71%), Gaps = 14/467 (3%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| |||| || | | ||| | ||| | ||||| ||||||| Sbjct 1380324 AGCAGGGCTTCGATGTCAGGCTTCATGTTGATGGTTAGAAAGCAGCAGCTGTCCCTGCGC 1380265 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 | ||| || || | || |||| ||||||||||| |||||||| |||||| || || Sbjct 1380264 ATAGGCACACCATCTGGGCCTACCAGGAACTTCTCGAGGTTCCAGGTGACGTCGGTG-GG 1380206 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 |||||||||||||||| |||| || ||||| | || | || | |||||| ||| Sbjct 1380205 CACACTGGAGACCAGGTGATGAACTTGGGGTGGGTCGTGCACGCAGTGGCGTCGTCACTA 1380146 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 || || ||||| |||| || ||||||||||||| || || ||| || | ||| || Sbjct 1380145 GGGGCAGGCAGAGCCTACCGCAGGAAGGCGAAGAAGGGGTGCGCCTGCGCGCTGTTCCCC 1380086 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTT---CCCA---GGACGGACG 83350 | ||||||||| ||| | ||||| |||||||| | | | ||| | ||| | Sbjct 1380085 TGGCACTTCTC----AGCGTGAAGTTGGGCTCGAACCAGCTACGGCCACTGAGTGGGAAG 1380030 Query 83351 TGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTA 83410 | | |||||||| |||||| |||| ||| || ||||| || ||| ||| || Sbjct 1380029 TAC-TCAGGGAATTTCGGATCTCTTTGTTCTTGGCATTCTCCTGATGCACGATCTGCTTG 1379971 Query 83411 CACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATC 83470 || | ||| | ||||| | ||| || | || || ||| || || |||||||||||||| Sbjct 1379970 CAAGAGAAGCGGAGCACCA-CAGGCCTGGGGC-CCGAGGTGCGGCGGCAGCTCGTTCATC 1379913 Query 83471 TGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTC 83517 || | ||| |||| ||| || | |||||||| |||| |||||||| Sbjct 1379912 TGGGCGTAGTCCCTGACGGTTGTGCCTCAGAGCAACGCCACGTTCTC 1379866 >seq1373 Length=18420737 Score = 150 bits (166), Expect = 2e-31 Identities = 298/430 (69%), Gaps = 17/430 (4%) Strand=Plus/Plus Query 83142 AGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCT 83201 |||||||||| |||||||||| || || || | ||||||||| |||||| |||| || Sbjct 3640510 AGAACTTCTCCAAGTTCCAGGTGACATCATTACATCACACTGGAAACCAGGTGATGAACT 3640569 Query 83202 GGGGGTCGCTCACGAGC-GTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGG 83260 |||| | ||| |||| ||| ||| | | || || ||||| || |||||| ||||| Sbjct 3640570 TGGGGCTGGTCATGAGCAGTGG-CAT--CATTACTGGGGGCCGGAAGAGCCTCTTGTAGG 3640626 Query 83261 AAGGCGAAGAGCGGATGTGCCCTTG--CACCGTTGACCTCGCACTTCTCGAAGAGCATAA 83318 ||| |||||| || ||||||||| |||| | ||||||||||||| | ||||| | Sbjct 3640627 AAGTTGAAGAGGGG--GTGCCCTTGTGCACCACTCTCCTCGCACTTCTCAGAAAGCATGA 3640684 Query 83319 AGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCAT 83378 | || |||||||| | |||| ||| | || | ||| | |||| || |||||| | | Sbjct 3640685 ATTTGGGCTCGAACCTGTTCTGAGGTCTGAGGAACTTGAAGGAATTCAGGATCTCTTCCT 3640744 Query 83379 TCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCC 83438 || ||| ||||||| || | | || || || ||||| | || ||||| |||| Sbjct 3640745 TCCTGGC-ATTTCCTGATGCCAGCACCACTTGCATGGGAAGCAAATATTGACCAGGCCCC 3640803 Query 83439 GAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTC 83498 | | ||| || |||| ||| || |||| | || ||| ||| || |||||| Sbjct 3640804 TGG--CAGAGGTGCTGCTGATGCTTGT---TCTGGGCATAGTCCTGGATAGTTGTACCTC 3640858 Query 83499 AGAGGGACGCTACGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAG 83558 ||| ||| || | || | | | |||| | | ||| | ||| || | |||||||| Sbjct 3640859 GGAGCGACACTGCATTTTTGGTCAGCAGCATATTGGCCCCCAGGAA-CCCAGGCTCACAG 3640917 Query 83559 GTTCTCCTCC 83568 | ||||||| Sbjct 3640918 G--CTCCTCC 3640925 >seq536 Length=25944906 Score = 122 bits (134), Expect = 1e-22 Identities = 192/267 (72%), Gaps = 6/267 (2%) Strand=Plus/Plus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| ||| ||||||||| ||| ||| Sbjct 25657196 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCGCGCCTGC 25657254 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || | || || |||||||| || |||||||||| || ||| | ||||||| Sbjct 25657255 TGGTGCACCTCTTCCCCGAGCTCTTCACGCACGAGAACCTGCGCAAGCAGTACAACTGCA 25657314 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 |||||| |||||||| |||| || |||||| ||| | | |||| ||||| Sbjct 25657315 GCGGCTCGCTGGGCAAGAAGCAG-CTGGACCCGTCGCGCATCAAGCTCATCCGCCACTAC 25657373 Query 50588 GTGCAGTTGCTGCACCCG-GCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTGGC 50646 |||||| |||| |||| ||| | | ||||| |||||||||| ||||| ||| Sbjct 25657374 GTGCAGCTGCTCTACCCCCGCGCCAAG-AACGACCGCGTGTGGACGCTGGAGTTCGTGGG 25657432 Query 50647 GTGCCTGGACGAGCGCTGCCGGCGCCG 50673 ||||||||||||||||||||||| Sbjct 25657433 CAAGCTGGACGAGCGCTGCCGGCGCCG 25657459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608785544869160