Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1153 165 8e-36 seq566 143 3e-29 seq424 105 7e-18 seq648 100 3e-16 seq1344 93.3 4e-14 seq516 86.0 6e-12 seq702 84.2 2e-11 >seq1153 Length=1501042 Score = 165 bits (182), Expect = 8e-36 Identities = 175/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || |||||||| ||||||||| | || || || ||| Sbjct 1169371 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1169430 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| |||||||||||| | ||||| Sbjct 1169431 GACACCATCGAGAACG-TCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 1169489 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| || |||||||||||||| || | ||||||||| |||||||| Sbjct 1169490 GCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 1169549 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| || || || || ||||||||||||| || Sbjct 1169550 CATCCAGAAGGAGTCCACTCTCCACCTGGTCCTGCGCTTGAGGGGGGG 1169597 Score = 154 bits (170), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || |||||||| ||||||||| | || || || ||| Sbjct 1169143 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1169202 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| |||||||||||| | ||||| Sbjct 1169203 GACACCATCGAGAACG-TCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 1169261 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| || || ||||||||||| || | ||||||||| |||||||| Sbjct 1169262 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 1169321 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||| ||||| || || | ||| | ||||| ||| Sbjct 1169322 CATCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGGGGGGGC 1169370 Score = 152 bits (168), Expect = 5e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | |||||||| ||||||||| | || || || ||| Sbjct 1170800 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1170859 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| |||||||||||| | |||||| Sbjct 1170860 GACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 1170919 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | |||| || || ||||||||||| || | ||||||||| ||||||||| Sbjct 1170920 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 1170979 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||| || || || || ||||||||||||| || Sbjct 1170980 ATCCAGAAGGAGTCCACTCTCCACCTGGTCCTGCGCTTGAGGGGGGG 1171026 Score = 145 bits (160), Expect = 8e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | |||||||| ||||||||| | || || || ||| Sbjct 1168915 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1168974 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| | || || | || ||||||||||||||| | |||||| Sbjct 1168975 GACACCATTGAGAATGTCAAAGGGAAGATCCAGGAAAAAGAGGGCATCCCCCCTGACCAG 1169034 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | |||| || |||||||||||||| || | ||||||||| ||||||||| Sbjct 1169035 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 1169094 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| ||||| || || | ||| | ||||| ||| Sbjct 1169095 ATCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGGGGGGGC 1169142 Score = 113 bits (124), Expect = 5e-20 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 |||||| || || | ||||| |||||||||||| | |||||||| | | |||| | Sbjct 1170648 TCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGAGGTTGATCTTTG 1170707 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 | || ||||||||||| || | ||||||||| ||||||||||||||||||||| ||| Sbjct 1170708 CCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAGGAGTCCA 1170767 Query 40886 CGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 | ||||| || || | ||| | || || ||| Sbjct 1170768 CTCTGCACCTGGTCCTCCGCCTCAGAGGAGGC 1170799 >seq566 Length=2972453 Score = 143 bits (158), Expect = 3e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| ||||| || || || || ||||| ||||||||| | || || || || Sbjct 801470 AAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 801411 Query 40747 ACCGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | | ||||| | |||| || || | || || |||||||||||| | || Sbjct 801410 AGTGACACCATCGAAAACG-TGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCAGA 801352 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | ||||||| || ||||| |||||||| || | ||||| || || || Sbjct 801351 CCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCTGATTA 801292 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| ||| | || ||||| || || |||| ||||||| || Sbjct 801291 CAACATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGTCTGAGGGGTGG 801241 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| | || || || ||| Sbjct 801239 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 801180 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | ||||| | |||| || || | || ||||| ||||||||| | ||||| Sbjct 801179 GACACCATCGAAAACG-TGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCCCCTGACCA 801121 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | ||||||| || ||||| |||||||| || | ||||| || || ||||| Sbjct 801120 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCTGATTACAA 801061 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||| ||| |||| || ||||| || | || ||||||| ||| Sbjct 801060 CATCCAGAAAGAGTCCACTCTCCATCTGGTTCTTCGTCTGAGGGGTGGC 801012 >seq424 Length=11562000 Score = 105 bits (116), Expect = 7e-18 Identities = 142/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| ||||| || || ||| | |||||| ||||||||| | ||||| || ||| Sbjct 7321798 ATGCAGATATTTGTGAAGACGG--ATGGGCAAGACCATCACCCTTGACGTTGAGACCAAT 7321855 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | || | | | |||| | ||||| | ||||| ||||||||||| ||||| Sbjct 7321856 GATACCATGGAGAAGGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCGCTTGACCAA 7321915 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 | || || || | | ||||||||||||||| |||| | ||| || |||||||| Sbjct 7321916 CGGCGTCTGATTTGTGTGGGCAAACAGCTGGAGGACGGCCACACTTTCTCAGACTACAAT 7321975 Query 40870 ATCCAGAAGGAGGCCAC 40886 |||||||| ||| |||| Sbjct 7321976 ATCCAGAAAGAGTCCAC 7321992 >seq648 Length=20061788 Score = 100 bits (110), Expect = 3e-16 Identities = 160/226 (71%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 40693 CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGAC 40752 || || || || || || || | ||||||| ||| |||| | || ||| | ||| ||| Sbjct 12805314 CAGATCTTTGTGAAGACCCTGATGGGCAAAGCCACCACCCTTGAGGTCAAGCCCAGTGAC 12805373 Query 40753 AGCG-TGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCA 40811 | | || |||| |||| | ||||| | ||||||||||||| ||| | | |||||| Sbjct 12805374 ACCACTGAGAACG-TCAAAGTCAAAATCCAAGACAAAGAGGGCACCCCACCTGTCCAGCA 12805432 Query 40812 ACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACAT 40871 | | || | |||||||||||||||||| | | | ||| || |||| ||| || Sbjct 12805433 GCATCCGATTTTCGCGGGCAAACAGCTGGAGGCTGGCCACACTCTGTCAGACTGCAATAT 12805492 Query 40872 CCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||| ||| |||| ||||| || ||| | ||| |||||||| Sbjct 12805493 CCAGAAAGAGTCCACCCTGCA-CTGGTGCTTCGCCCATGGGGCGGC 12805537 >seq1344 Length=6361600 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || ||||| | |||||||| || || || || || |||||||||| || |||||| Sbjct 6043296 GGAGAGCGGGTTGTGGCCTTTGCTGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTCGCG 6043355 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 | ||||| |||||||||||||||||||| ||||| ||||| || || ||| || || Sbjct 6043356 TCGATATTCTGGCTCAAGAAACGCGGCCTGATGCCTGGCCTCACGTTTTCCAATGAACTT 6043415 Query 117152 ATCTCCAGGGACGAGG 117167 || ||| || |||| Sbjct 6043416 ATTAGCAGAGATGAGG 6043431 >seq516 Length=13457255 Score = 86.0 bits (94), Expect = 6e-12 Identities = 144/202 (71%), Gaps = 6/202 (3%) Strand=Plus/Plus Query 40693 CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGAC 40752 ||||| || || || || || | |||||| ||||||||| || | ||||| ||| ||| Sbjct 9362472 CAAATCTTTGTGAAGACCCTGATGGGCAAGACCATCACCCTCAAGGTCGAGCCCAGTGAC 9362531 Query 40753 AGCG-TGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCA 40811 | | || || | ||| | ||||| | ||||| |||| ||||| | |||||||| Sbjct 9362532 ACCACTGAGAATGG-CAAAGCCAAAATCCAAGACAAGGAGGCCATCCTGCCTGACCAGCA 9362590 Query 40812 ACGACTCATCTACGCGGG-CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACA 40870 | || || | || || |||||||||||| |||| ||| | ||| ||| |||| | Sbjct 9362591 GCATCTGATTTTTGCAGGACAAACAGCTGGAGGACG-CCGCCCTCTCCCAGACCACAATA 9362649 Query 40871 TCCAGAAGGAGGCCACGCTGCA 40892 |||||| ||| |||| ||||| Sbjct 9362650 TCCAGA--GAGTCCACCCTGCA 9362669 >seq702 Length=8706000 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 |||||||| | |||||||| || || || | |||||||||||||||||| |||| ||| Sbjct 2878393 GGCATCCCTCCTGACCAGCAGCGTCTGATTTTCGCGGGCAAACAGCTGGAAGACGGCCGC 2878452 Query 40852 ACCCTCAACGACTACAACATCCAGAA 40877 ||||| |||||||| |||||||| Sbjct 2878453 ACCCTGTCAGACTACAATATCCAGAA 2878478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515209674885040