Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09-
06] 1,479 sequences; 2,391,082,183 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq1153 165 8e-36
seq566 143 3e-29
seq424 105 7e-18
seq648 100 3e-16
seq1344 93.3 4e-14
seq516 86.0 6e-12
seq702 84.2 2e-11
>seq1153
Length=1501042
Score = 165 bits (182), Expect = 8e-36
Identities = 175/228 (77%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || |||||||| ||||||||| | || || || |||
Sbjct 1169371 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1169430
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| |||||| || || | ||||| |||||||||||| | |||||
Sbjct 1169431 GACACCATCGAGAACG-TCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 1169489
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| | | |||| || |||||||||||||| || | ||||||||| ||||||||
Sbjct 1169490 GCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 1169549
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
||||||||||||| |||| || || || || ||||||||||||| ||
Sbjct 1169550 CATCCAGAAGGAGTCCACTCTCCACCTGGTCCTGCGCTTGAGGGGGGG 1169597
Score = 154 bits (170), Expect = 2e-32
Identities = 173/229 (76%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || |||||||| ||||||||| | || || || |||
Sbjct 1169143 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1169202
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| |||||| || || | ||||| |||||||||||| | |||||
Sbjct 1169203 GACACCATCGAGAACG-TCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 1169261
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| | | |||| || || ||||||||||| || | ||||||||| ||||||||
Sbjct 1169262 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 1169321
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
||||||||||||| |||| ||||| || || | ||| | ||||| |||
Sbjct 1169322 CATCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGGGGGGGC 1169370
Score = 152 bits (168), Expect = 5e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || | |||||||| ||||||||| | || || || |||
Sbjct 1170800 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1170859
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | |||||| || || | ||||| |||||||||||| | ||||||
Sbjct 1170860 GACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 1170919
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| | | |||| || || ||||||||||| || | ||||||||| |||||||||
Sbjct 1170920 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 1170979
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|||||||||||| |||| || || || || ||||||||||||| ||
Sbjct 1170980 ATCCAGAAGGAGTCCACTCTCCACCTGGTCCTGCGCTTGAGGGGGGG 1171026
Score = 145 bits (160), Expect = 8e-30
Identities = 169/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || | |||||||| ||||||||| | || || || |||
Sbjct 1168915 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1168974
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | |||| | || || | || ||||||||||||||| | ||||||
Sbjct 1168975 GACACCATTGAGAATGTCAAAGGGAAGATCCAGGAAAAAGAGGGCATCCCCCCTGACCAG 1169034
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| | | |||| || |||||||||||||| || | ||||||||| |||||||||
Sbjct 1169035 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 1169094
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
|||||||||||| |||| ||||| || || | ||| | ||||| |||
Sbjct 1169095 ATCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGGGGGGGC 1169142
Score = 113 bits (124), Expect = 5e-20
Identities = 116/152 (76%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825
|||||| || || | ||||| |||||||||||| | |||||||| | | |||| |
Sbjct 1170648 TCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGAGGTTGATCTTTG 1170707
Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885
| || ||||||||||| || | ||||||||| ||||||||||||||||||||| |||
Sbjct 1170708 CCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAGGAGTCCA 1170767
Query 40886 CGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
| ||||| || || | ||| | || || |||
Sbjct 1170768 CTCTGCACCTGGTCCTCCGCCTCAGAGGAGGC 1170799
>seq566
Length=2972453
Score = 143 bits (158), Expect = 3e-29
Identities = 172/231 (74%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
||||||||||| ||||| || || || || ||||| ||||||||| | || || || ||
Sbjct 801470 AAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 801411
Query 40747 ACCGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805
| |||| | | | ||||| | |||| || || | || || |||||||||||| | ||
Sbjct 801410 AGTGACACCATCGAAAACG-TGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCAGA 801352
Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865
|||||| | ||||||| || ||||| |||||||| || | ||||| || || ||
Sbjct 801351 CCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCTGATTA 801292
Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|||||||||||| ||| | || ||||| || || |||| ||||||| ||
Sbjct 801291 CAACATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGTCTGAGGGGTGG 801241
Score = 136 bits (150), Expect = 4e-27
Identities = 169/229 (74%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || || ||||| ||||||||| | || || || |||
Sbjct 801239 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 801180
Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | ||||| | |||| || || | || ||||| ||||||||| | |||||
Sbjct 801179 GACACCATCGAAAACG-TGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCCCCTGACCA 801121
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| | ||||||| || ||||| |||||||| || | ||||| || || |||||
Sbjct 801120 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCTGATTACAA 801061
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
||||||||| ||| |||| || ||||| || | || ||||||| |||
Sbjct 801060 CATCCAGAAAGAGTCCACTCTCCATCTGGTTCTTCGTCTGAGGGGTGGC 801012
>seq424
Length=11562000
Score = 105 bits (116), Expect = 7e-18
Identities = 142/197 (72%), Gaps = 2/197 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| ||||| || || ||| | |||||| ||||||||| | ||||| || |||
Sbjct 7321798 ATGCAGATATTTGTGAAGACGG--ATGGGCAAGACCATCACCCTTGACGTTGAGACCAAT 7321855
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | || | | | |||| | ||||| | ||||| ||||||||||| |||||
Sbjct 7321856 GATACCATGGAGAAGGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCGCTTGACCAA 7321915
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
| || || || | | ||||||||||||||| |||| | ||| || ||||||||
Sbjct 7321916 CGGCGTCTGATTTGTGTGGGCAAACAGCTGGAGGACGGCCACACTTTCTCAGACTACAAT 7321975
Query 40870 ATCCAGAAGGAGGCCAC 40886
|||||||| ||| ||||
Sbjct 7321976 ATCCAGAAAGAGTCCAC 7321992
>seq648
Length=20061788
Score = 100 bits (110), Expect = 3e-16
Identities = 160/226 (71%), Gaps = 3/226 (1%)
Strand=Plus/Plus
Query 40693 CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGAC 40752
|| || || || || || || | ||||||| ||| |||| | || ||| | ||| |||
Sbjct 12805314 CAGATCTTTGTGAAGACCCTGATGGGCAAAGCCACCACCCTTGAGGTCAAGCCCAGTGAC 12805373
Query 40753 AGCG-TGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCA 40811
| | || |||| |||| | ||||| | ||||||||||||| ||| | | ||||||
Sbjct 12805374 ACCACTGAGAACG-TCAAAGTCAAAATCCAAGACAAAGAGGGCACCCCACCTGTCCAGCA 12805432
Query 40812 ACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACAT 40871
| | || | |||||||||||||||||| | | | ||| || |||| ||| ||
Sbjct 12805433 GCATCCGATTTTCGCGGGCAAACAGCTGGAGGCTGGCCACACTCTGTCAGACTGCAATAT 12805492
Query 40872 CCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
|||||| ||| |||| ||||| || ||| | ||| ||||||||
Sbjct 12805493 CCAGAAAGAGTCCACCCTGCA-CTGGTGCTTCGCCCATGGGGCGGC 12805537
>seq1344
Length=6361600
Score = 93.3 bits (102), Expect = 4e-14
Identities = 102/136 (75%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091
|| ||||| | |||||||| || || || || || |||||||||| || ||||||
Sbjct 6043296 GGAGAGCGGGTTGTGGCCTTTGCTGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTCGCG 6043355
Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151
| ||||| |||||||||||||||||||| ||||| ||||| || || ||| || ||
Sbjct 6043356 TCGATATTCTGGCTCAAGAAACGCGGCCTGATGCCTGGCCTCACGTTTTCCAATGAACTT 6043415
Query 117152 ATCTCCAGGGACGAGG 117167
|| ||| || ||||
Sbjct 6043416 ATTAGCAGAGATGAGG 6043431
>seq516
Length=13457255
Score = 86.0 bits (94), Expect = 6e-12
Identities = 144/202 (71%), Gaps = 6/202 (3%)
Strand=Plus/Plus
Query 40693 CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGAC 40752
||||| || || || || || | |||||| ||||||||| || | ||||| ||| |||
Sbjct 9362472 CAAATCTTTGTGAAGACCCTGATGGGCAAGACCATCACCCTCAAGGTCGAGCCCAGTGAC 9362531
Query 40753 AGCG-TGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCA 40811
| | || || | ||| | ||||| | ||||| |||| ||||| | ||||||||
Sbjct 9362532 ACCACTGAGAATGG-CAAAGCCAAAATCCAAGACAAGGAGGCCATCCTGCCTGACCAGCA 9362590
Query 40812 ACGACTCATCTACGCGGG-CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACA 40870
| || || | || || |||||||||||| |||| ||| | ||| ||| |||| |
Sbjct 9362591 GCATCTGATTTTTGCAGGACAAACAGCTGGAGGACG-CCGCCCTCTCCCAGACCACAATA 9362649
Query 40871 TCCAGAAGGAGGCCACGCTGCA 40892
|||||| ||| |||| |||||
Sbjct 9362650 TCCAGA--GAGTCCACCCTGCA 9362669
>seq702
Length=8706000
Score = 84.2 bits (92), Expect = 2e-11
Identities = 70/86 (81%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851
|||||||| | |||||||| || || || | |||||||||||||||||| |||| |||
Sbjct 2878393 GGCATCCCTCCTGACCAGCAGCGTCTGATTTTCGCGGGCAAACAGCTGGAAGACGGCCGC 2878452
Query 40852 ACCCTCAACGACTACAACATCCAGAA 40877
||||| |||||||| ||||||||
Sbjct 2878453 ACCCTGTCAGACTACAATATCCAGAA 2878478
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515209674885040
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