Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq485 107 2e-18 seq1344 84.2 2e-11 >seq485 Length=11789088 Score = 107 bits (118), Expect = 2e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 15887 TAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTTT 15946 |||||||| ||| || | || ||||||||| | | | || |||||||| | | Sbjct 134119 TAAAAATCTGCATCCAGGGTGAAGACATTATCTGTAGTTTCTGCCATAACTGCAAAACGT 134178 Query 15947 TGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCC 16006 ||||| || ||||| || ||||||||||||||||| ||||| || ||||| |||||| Sbjct 134179 TGATACTCTGCAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCCAAAGAAATGTTTTCC 134238 Query 16007 ATAAAATCAAAAGGATTTTTTG 16028 ||||||||||| ||||||| || Sbjct 134239 ATAAAATCAAAGGGATTTTCTG 134260 >seq1344 Length=6361600 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || ||||| || || || ||||| || || ||||| || Sbjct 6043429 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCTTG 6043370 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | || || |||||||||||||| || ||||| ||||| ||||| || Sbjct 6043369 AGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGGCC 6043310 Query 16379 ACCAATCGCTCACC 16392 || | ||||| || Sbjct 6043309 ACAACCCGCTCTCC 6043296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462503449309400