Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq623 1597 0.0 seq533 583 6e-162 seq517 187 2e-42 >seq623 Length=19124984 Score = 1597 bits (1770), Expect = 0.0 Identities = 1354/1671 (81%), Gaps = 63/1671 (4%) Strand=Plus/Plus Query 107140 TCTTAGGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTTTACCATCAC 107199 || ||||| || ||| ||||||| |||||||||| ||| || ||| ||| ||||||| Sbjct 2678633 TCGTAGGCCGGTCTTTACTGAGGTTATTTGTCTAGTAAAGGAATGTATTTTTGCCATCAC 2678692 Query 107200 TCTGGAGTTGAACTT--GATGTTCT--------------GGATTAGTTTGTAATTAAAGG 107243 | |||||||| |||| ||||||| || ||||| ||||||| |||| Sbjct 2678693 TTTGGAGTTGCACTTTTGATGTTCCTGTGAATACATGCAGGGTTAGTGTGTAATTGAAGG 2678752 Query 107244 CATTTTGTTCTGTCCAAGGATC---TCCTCCTCCACCTTGCCTGTGCCCAAACTCTCCTG 107300 ||||||||||||||||||||| ||||||||| || | | |||||||||||||| ||| Sbjct 2678753 CATTTTGTTCTGTCCAAGGATTCCATCCTCCTCCTCCGTCCTTGTGCCCAAACTCTACTG 2678812 Query 107301 ATCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCATCTG 107360 | || ||| || ||| |||| | |||||||||||| | || | | | | | ||| Sbjct 2678813 GTTTCTCATTCCGTGAGGATGATTTGGTGGAAGAAGATACAGTGGCAGCAGCGTTACCTG 2678872 Query 107361 TGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGGTTT 107420 |||||||||||||||||||||||||||||| ||||| ||||||| |||| ||||| || Sbjct 2678873 TGGGCCCTGGGCTGCTATATGCTGCTGGCCATTGTTGCTCTGAGGCTTTGTCTCAGATTG 2678932 Query 107421 AAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGTAGG 107480 |||||||| | |||||| |||||||| ||||||| || || ||||| | ||||||||| Sbjct 2678933 AAATGTGACTTTGATTCCCTGGATCTGAAGTCCAGAGATTTTCAGAGCCGGCACTGTAGA 2678992 Query 107481 GACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGGATC 107540 ||||| |||||||| |||||| |||||||||||||||||||||||||||||| ||||| Sbjct 2678993 GACATCTTGTACAAGTCCCTGAAACTGCCAGCAAAGAGATCCATCAACTGTTCTCGGATC 2679052 Query 107541 ACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAA 107600 | | |||||||||| | |||||| | |||| | || ||||| ||||| | ||||| Sbjct 2679053 ATCCAAGGGGACCAGCAGGCAGTGATTGAGGCTGTGCTGGACAATCTGGAGATCAAGAAC 2679112 Query 107601 AAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCTTC 107660 |||||| |||| |||| | ||| | ||||| ||||| |||||||||||||||| ||| Sbjct 2679113 AAGCGGAAGCCTTTCACAGACACTGACTACCTTAACATGACCAGAGACTGTGAGCACTTT 2679172 Query 107661 AAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATT 107720 ||||| ||||||||||||||| |||||| ||||| |||||||| |||||||||| ||| Sbjct 2679173 AAGGCTGAAAGGAAGTTCATACGGTTCCCTCTGAGCCAAGAAGAGTTAGACTTCCCTATT 2679232 Query 107721 GCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTG 107780 |||||||| ||||||||||||||||| || |||||||||||| | |||| ||||| ||| Sbjct 2679233 GCCTACTCAATGGTGGTCCATGAGAAAATAGAAAACTTTGAAAGATTGCTCCGAGCTGTG 2679292 Query 107781 TATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAA 107840 ||||||||||||||||||||||| |||||||||||| ||| |||||||| ||||||||| Sbjct 2679293 TATGCCCCTCAGAACATATACTGCATCCACGTGGATGAGAAATCCCCAGAAACTTTCAAA 2679352 Query 107841 GAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTC 107900 ||||| |||||||| |||||||| |||||||| |||||||||||||||||||||||||| Sbjct 2679353 GAGGCAGTCAAGGCAATTATTTCATGCTTCCCAAATGTCTTCATGGCCAGTAAGTTGGTT 2679412 Query 107901 CCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTG 107960 | |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 2679413 CGGGTGGTTTATGCCTCCTGGTCCAGGGTGCAGGCTGACCTGAACTGTATGGAAGACTTG 2679472 Query 107961 CTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATA 108020 ||||||||| ||||||||||||| |||||||| |||||||| ||||||||||| || ||| Sbjct 2679473 CTCCAGAGCCCAGTGCCATGGAAATACTTACTAAATACATGTGGGACAGACTTTCCTATA 2679532 Query 108021 AAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAG 108080 ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct 2679533 AAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAATGGGAAGAACAGTATGGAG 2679592 Query 108081 TCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGAC 108140 || || ||||| |||||| |||||| | |||||||||||| | ||||||| | |||| Sbjct 2679593 TCAGAAATACCTACTGAGTACAAAAAGACTCGCTGGAAATATCACTATGAGACAAAAGAC 2679652 Query 108141 ACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACA 108200 ||| |||| |||| |||||||||||| |||||||||||||| |||| ||||||||| Sbjct 2679653 ACATTGTATATAACCAACAAGATGAAGGATCCTCCCCCTGATAACATACCTATGTTCACA 2679712 Query 108201 GGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAA 108260 |||||||||||| |||| || || |||| |||||||| |||||||||||| ||||| || Sbjct 2679713 GGGAATGCCTATATTGTAGCTTCCCGAGACTTTGTCCGACATGTCTTAGAGAACCCCAAG 2679772 Query 108261 TCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCC 108320 |||| | |||| |||||||||| |||||||||||||||||||| || || || |||||| Sbjct 2679773 TCCCGACAACTGATTGAATGGGTAAAAGACACCTATAGCCCCGATGAGCATCTATGGGCC 2679832 Query 108321 ACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATC 108380 || ||||||||||| || ||||||||||||||| |||| |||| |||||| |||| || Sbjct 2679833 ACGCTTCAGCGTGCACCATGGATGCCTGGCTCTATTCCCTACCACTCCAAGTTTCACGTC 2679892 Query 108381 TCAGACATGAC-TGCCATCGCCAGG-------------------CTCGTCAAGTGGCAGT 108420 ||||| ||| | ||||| ||||| || |||||||||||| Sbjct 2679893 TCAGATATGGCAGGCCAT-TCCAGGCTGGGGGCATGGGGGGGGCCTGGTCAAGTGGCAGG 2679951 Query 108421 ACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGA 108480 ||| |||||| | |||| |||||||| ||||||||||| |||||||||||||| | | Sbjct 2679952 GCCATGAGGGAAACATCAGTATGGGGGCACCTTATGCACCTTGCTCTGGAATCCACCAGC 2680011 Query 108481 GGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCT 108540 || | ||||| ||||| ||| | || |||||| | |||||||| || ||||||||||||| Sbjct 2680012 GGTCTATCTGTATTTATGGGACTGGAGACCTGCATTGGATTCTTCAAAACCATCACCTCT 2680071 Query 108541 TGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACC 108600 |||| |||||||||||||| | ||||||||| || || || ||||| |||||||||||| Sbjct 2680072 TGGCCAACAAGTTTGACCCAAAGGTGGATGACAATGTTCTTCAGTGTTTAGAAGAGTACT 2680131 Query 108601 TACGTCATAAGGCCATCTATGGGACTGAACTTTGA-------------------GCTGCA 108641 ||||||||||||||||||||||||||||||| ||| ||| | Sbjct 2680132 TACGTCATAAGGCCATCTATGGGACTGAACTCTGACATAAACTATAAGAGGATTGCTAC- 2680190 Query 108642 CTGTGGGCCAGGGAC-TGTGCCAACATGCCCAGGGCGTACTGGTACTGTGTGGGGTGGGG 108700 ||||||| || | || |||| |||| | | | | |||| || ||||||||||| Sbjct 2680191 CTGTGGGGCAAGAACATGTGGATACATACTCCAGATGGGCTGGGACAATGTGGGGTGGGA 2680250 Query 108701 GACGAGGGCTGTGGAATCCATGGCATCCCCCAGGGTCAGAGGGCTGCTTTG 108751 ||| |||||| | |||| |||||||||| | || || |||||||| || Sbjct 2680251 GACCAGGGCTCTACAATCTGTGGCATCCCCAA--GTTAGGGGGCTGCTATG 2680299 >seq533 Length=14969682 Score = 583 bits (646), Expect = 6e-162 Identities = 538/681 (79%), Gaps = 25/681 (4%) Strand=Plus/Minus Query 108088 TACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGT 108147 ||||| | |||| |||||| | |||||||||||| | || ||| | ||||||| | | Sbjct 13568436 TACCTACCGAGTACAAAAAGACTCGCTGGAAATATCACT--GAGACAAAAGACACATTCT 13568379 Query 108148 ACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATG 108207 || |||| |||||||||||| |||||||||||||| || | || ||||||||||||| Sbjct 13568378 ACGTAACCAACAAGATGAAGGATCCTCCCCCTGATAACATATCTATATTCACAGGGAATG 13568319 Query 108208 CCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAA 108267 ||||| |||| || || |||| |||||||| |||||||||||| ||||| || |||| | Sbjct 13568318 CCTATATTGTAGCTTCCCGAGACTTTGTCCGACATGTCTTAGAGAACCCCAAGTCCCGAC 13568259 Query 108268 GACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTC 108327 |||| |||||||||| |||||||||||||||||||| || || || |||||||| |||| Sbjct 13568258 AACTGATTGAATGGGTAAAAGACACCTATAGCCCCGATGAGCATCTATGGGCCACGCTTC 13568199 Query 108328 AGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACA 108387 ||||||| || ||||||||||||| | |||| |||| |||||| |||| ||||||| | Sbjct 13568198 AGCGTGCACCATGGATGCCTGGCTGTATTCCCTACCACTCCAAGTTTCACGTCTCAGATA 13568139 Query 108388 TGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGG 108447 || | ||||| |||||||| |||||||||||| ||| |||||| | |||| ||||||| Sbjct 13568138 TGGCAGCCATTGCCAGGCTGGTCAAGTGGCAGGGCCATGAGGGAAACATCAGTATGGGGG 13568079 Query 108448 CGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGG 108507 | ||||||||||| |||||||||||||| | | || | ||||| ||||| ||| | || | Sbjct 13568078 CACCTTATGCACCTTGCTCTGGAATCCACCAGCGGTCTATCTGTATTTATGGGACTGGAG 13568019 Query 108508 ACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGG 108567 ||||| | |||||||| || ||||||||||||||||| |||||||||||||| | ||||| Sbjct 13568018 ACCTGCATTGGATTCTTCAAAACCATCACCTCTTGGCCAACAAGTTTGACCCAAAGGTGG 13567959 Query 108568 ATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGGGACTG 108627 |||| || || || ||||| |||||||||||| ||||||||||||||||||||||||||| Sbjct 13567958 ATGACAATGTTCTTCAGTGTTTAGAAGAGTACTTACGTCATAAGGCCATCTATGGGACTG 13567899 Query 108628 AACTTTGA-------------------GCTGCACTGTGGGCCAGGGAC-TGTGCCAACAT 108667 |||| ||| ||| | ||||||| || | || |||| |||| Sbjct 13567898 AACTCTGACATAAACTATAAGAGGATTGCTAC-CTGTGGGGCAAGAACATGTGGATACAT 13567840 Query 108668 GCCCAGGGCGTACTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAATCCATGGCATC 108727 | | | | |||| || ||||||||||| ||| |||||| || |||| ||||||| Sbjct 13567839 ACTCCAGATGGGCTGGGACAATGTGGGGTGGGAGACCAGGGCTCTGCAATCTGTGGCATC 13567780 Query 108728 CCCCAGGGTCAGAGGGCTGCT 108748 || | || || |||||||| Sbjct 13567779 CCTAA--GTTAGGGGGCTGCT 13567761 >seq517 Length=11963285 Score = 187 bits (206), Expect = 2e-42 Identities = 586/894 (66%), Gaps = 39/894 (4%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || |||||||||||| ||| || |||||||| || || || ||||| ||| | || Sbjct 8483826 CCCCTTAGTAAAGAAGAGGCAGAGTTTCCCATTGCATATTCTATAGTGGTTCATCACAAA 8483885 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 || |||| |||| |||| ||| | ||| | ||| |||||||| | ||||| | Sbjct 8483886 ATCGAAATGCTTGACAGGCTCCTGAGGGCCATCTATATGCCTCAGAATCTCTACTGCATT 8483945 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 |||||||| || || || | || | ||||| | || ||| |||||| Sbjct 8483946 CACGTGGACAGAAAATCAGAGGATTCCTTTTTGGCCGCGGTGATGGGCATCGCCTCCTGC 8484005 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 ||| || |||||| |||||||| || ||| ||||| |||||||| ||| | Sbjct 8484006 TTCAGTAACGTCTTCGTGGCCAGTCAGCTGGAGAGCGTGGTGTATGCCTCTTGGAGTCGG 8484065 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 || || || ||||| ||||| ||| ||||| | || || | ||||| |||| || Sbjct 8484066 GTTCAGGCCGACCTCAACTGCATGCAAGACCTCTACCGGA--TGAGTGCAGACTGGAGGT 8484123 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGG 108045 |||| | ||| ||||| | || ||||| || || ||||| ||||| |||| | Sbjct 8484124 ACTTGATAAATCTTTGCGGCATGGATTTCCCTATTAAAACCAACCTGGAGATTGTCCGGA 8484183 Query 108046 CCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTA---CCTTCTGAGTCCa 108102 ||||| ||| | ||| | ||||| | ||||| ||| | || || | | Sbjct 8484184 AGCTCAAATCGTTAATGGGCGAAAACAGCCTAGAGTCCGAGAGAATGCCATCCAAT---A 8484240 Query 108103 aaaaaaaTCGCTGGAAATACCGCTATG-AGGTGACAGACACACTGTACCCT-ACCAGCAA 108160 ||||| | | |||||| | | ||| || || | | | | || |||| || Sbjct 8484241 AAAAAGAAAGGTGGAAAAAGCATTATACAGTTGTTA-----ATGGAAAGCTGACCAACAC 8484295 Query 108161 GATGAAGGAC---------CCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTA 108211 | || |||| ||||| | ||| | ||| ||||| | || | |||||| Sbjct 8484296 GGGGACGGACAAAATGCACCCTCCTCTTGAAACG---CCCCTGTTCTCGGGCAGTGCCTA 8484352 Query 108212 TTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAA-ATCCCAAAGAC 108270 ||||||| | | | | ||| |||| |||| || || |||| ||| Sbjct 8484353 CTTTGTGGTCAGTAGGAAGTATGTGGGCTATGTGCTAGAGAATGAAAAGATCCAGAAGTT 8484412 Query 108271 TGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGC 108330 | | || |||| |||||||||||| || || || || | ||||||||||| | ||| Sbjct 8484413 TA-TGGAGTGGGCCAAAGACACCTACAGTCCAGATGAGTATCTCTGGGCCACTATCCAGA 8484471 Query 108331 GTGCTCCGTGGA-TGCCTGGCTC--TGTTCCTA-GCCACCCCAAGTATCACATCTCAGAC 108386 | | ||| | | | || ||||| ||| |||| |||| |||||| |||| || ||| Sbjct 8484472 G-GATCCCCGAAGTCCCAGGCTCACTGTCCCTAAGCCAG---AAGTATGACATGTCTGAC 8484527 Query 108387 ATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGG 108446 ||| || ||||| ||| ||||||||||||||||| || || |||||| || |||| Sbjct 8484528 ATGCACGCGATCGCGAGGTTCGTCAAGTGGCAGTACTTTGAAGGTGATGTCTCCAAGGGG 8484587 Query 108447 GCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGG 108506 || || || |||||||| || |||| | | | | || | | ||| || || Sbjct 8484588 GCCCCCTACCCACCCTGCAGCGGGGTCCACGTGCGTTCTGTGTGTGTCTTCGGAGCAGGT 8484647 Query 108507 GACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCG 108560 ||| || ||||||| || | || || ||| | || || |||||||||||| || Sbjct 8484648 GACTTGAACTGGATGCTACGAAAGCACCACTTGTTTGCCAACAAGTTTGACACG 8484701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348262522346046