Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09-
06] 1,479 sequences; 2,391,082,183 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq1344 132 6e-26
seq722 125 9e-24
seq585 102 1e-16
seq485 91.5 2e-13
seq515 86.0 8e-12
>seq1344
Length=6361600
Score = 132 bits (146), Expect = 6e-26
Identities = 111/136 (82%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663
|||| ||||| ||||| | ||| || ||||||||||| || ||||| ||||| || || |
Sbjct 6043431 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCT 6043372
Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723
| ||||| ||||| || ||||| || || ||||||||||||||||| |||||||||||||
Sbjct 6043371 TGAGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 6043312
Query 33724 CAATAAGTCTCTCTCC 33739
| | || | ||||||
Sbjct 6043311 CCACAACCCGCTCTCC 6043296
Score = 96.9 bits (106), Expect = 4e-15
Identities = 85/106 (80%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901
|||||||| ||||| || || | ||||||||||| || ||||| |||||||| |||||
Sbjct 6041436 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATCTCAGAATGGATGTTTTCCATGGC 6041377
Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947
|| || || ||||||||||| | || || |||||||| ||||||
Sbjct 6041376 AATTTGGAAGCCGTAGAAACAGCGGGCTTCAGTAATCTGAACTTCT 6041331
>seq722
Length=1584642
Score = 125 bits (138), Expect = 9e-24
Identities = 110/137 (80%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447
|| || |||||||| ||||| ||||| ||||| || || || |||||||| ||||| |
Sbjct 1256636 ACCTGAAATTCTCCCGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCGATG 1256695
Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507
|||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | ||||
Sbjct 1256696 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 1256755
Query 62508 CTATTTCTAAGACCGTA 62524
|| ||||| | ||| ||
Sbjct 1256756 CTGTTTCTTATACCATA 1256772
Score = 100 bits (110), Expect = 4e-16
Identities = 136/190 (72%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685
|||| || |||||||| || | || || || || | ||| || || || || || || |
Sbjct 1262136 CATAGGTTTCATATGGGCCATGCTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 1262195
Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745
||||||| ||||||||||| | ||| ||||| || ||||| || || ||||| ||||
Sbjct 1262196 AATAAATAGTTTCAAAGATTTGCTTGTTTAGTAACTGGGCTTCTGGACTCTCAAAAGGAT 1262255
Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805
| | | |||||||| || || || | ||||| || || || || || || | ||| |
Sbjct 1262256 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCGATTCCAATGGGGCGATGGC 1262315
Query 62806 TCTTATTAGA 62815
||||| ||
Sbjct 1262316 GTTTATTTGA 1262325
Score = 96.9 bits (106), Expect = 4e-15
Identities = 98/128 (77%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322
|| |||||||||||| |||||||| ||||||||||| || | || || ||||| | |
Sbjct 1266459 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCTCTGGCACG 1266518
Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382
||||| || |||||||| ||||| || | ||| || ||| | | ||| || |||||||
Sbjct 1266519 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCA 1266578
Query 63383 CGGTTCCA 63390
|| ||||
Sbjct 1266579 AGGCTCCA 1266586
>seq585
Length=8822955
Score = 102 bits (112), Expect = 1e-16
Identities = 94/119 (79%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548
||| ||||||||||| ||| || | ||||| || || |||||||||| || |||
Sbjct 2333511 GTTTCTTTCTATGATATATATATTATTCTGCAAGCATTTATACTGACTACTGCCGTATTT 2333452
Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607
|||| | ||||| ||| |||||||||||| |||||||||||||| ||| ||| | ||||
Sbjct 2333451 CTTGGTTTGACTGCATATACTCTACAATCTAAGAGAGATTTCAGCAAATTTGGAGCAGG 2333393
Score = 86.0 bits (94), Expect = 8e-12
Identities = 61/70 (87%), Gaps = 0/70 (0%)
Strand=Plus/Minus
Query 188172 TGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCAC 188231
|||||||| |||||||| ||||||||||||| ||||| ||||| |||||||| | ||||
Sbjct 2345456 TGCTCCTCGATCGAGGATGACTTCAACTATGGCAGCTGCGTGGCCTCTGCCAGTGGGCAC 2345397
Query 188232 ATACGAATGG 188241
|| |||||||
Sbjct 2345396 ATTCGAATGG 2345387
Score = 82.4 bits (90), Expect = 1e-10
Identities = 83/107 (78%), Gaps = 1/107 (1%)
Strand=Plus/Minus
Query 188244 TTTCTAAGAAAAGTCTACGGTATCCTTG-TCTACAATTTCCTTTAACAACGGCAACAGCT 188302
|||||||||||||||||| | |||||| ||| ||| ||| ||||| || | ||| ||
Sbjct 2342189 TTTCTAAGAAAAGTCTACAGCATCCTTTCTCTGCAAGTTCTCTTAACTACAGTGACATCT 2342130
Query 188303 GCAGTATTTTTATACTTTGAATGCATTCGGACATTTATACAAGGGAG 188349
| | |||||||||||||| | || ||||||||| |||| | |||
Sbjct 2342129 TCTTTTTTTTTATACTTTGAGTCTATACGGACATTTGTACATGAGAG 2342083
>seq485
Length=11789088
Score = 91.5 bits (100), Expect = 2e-13
Identities = 71/85 (84%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 34080 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 34139
|| ||||| ||||||| || ||||||| ||||||||||||||| ||||| |||||| |
Sbjct 157412 ACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATGTCAGGG 157471
Query 34140 TATTGGATTGGGAAAATAACAAATC 34164
|| |||||||| || || |||||||
Sbjct 157472 TACTGGATTGGAAAGATGACAAATC 157496
>seq515
Length=2727018
Score = 86.0 bits (94), Expect = 8e-12
Identities = 143/206 (69%), Gaps = 3/206 (1%)
Strand=Plus/Plus
Query 31348 TGTACTTCTTCAAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCT 31407
|| ||||| || | |||||||| | | || |||| ||| || ||||| || |||| |||
Sbjct 2713145 TGAACTTCCTCTATTTCTGGATCAAAAATCCGTTCATAAATGAGCTGTGCAATTCGATCA 2713204
Query 31408 CCAGTATTTACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCC 31467
|| | || || | |||| | ||| ||| ||||| || | || || | |||||
Sbjct 2713205 CCCTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAATAGCACAACACCCACATTTCCT 2713264
Query 31468 CTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACCA 31524
||||||||||| ||||| || || ||| || ||| || | ||| | || |||
Sbjct 2713265 CTATAATCTTCATCTATGACGCCAGCTCTTACATCTATGAAGTGTTTCGCAGCCAAGCCA 2713324
Query 31525 GACCTAGGAGCTATTCTACCATAGCA 31550
|| | ||||||| ||| ||||||||
Sbjct 2713325 GAACGGGGAGCTACTCTTCCATAGCA 2713350
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629805956247120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |