Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1344 132 6e-26 seq722 125 9e-24 seq585 102 1e-16 seq485 91.5 2e-13 seq515 86.0 8e-12 >seq1344 Length=6361600 Score = 132 bits (146), Expect = 6e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | ||| || ||||||||||| || ||||| ||||| || || | Sbjct 6043431 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCT 6043372 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| ||||| || ||||| || || ||||||||||||||||| ||||||||||||| Sbjct 6043371 TGAGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 6043312 Query 33724 CAATAAGTCTCTCTCC 33739 | | || | |||||| Sbjct 6043311 CCACAACCCGCTCTCC 6043296 Score = 96.9 bits (106), Expect = 4e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||||||| ||||| || || | ||||||||||| || ||||| |||||||| ||||| Sbjct 6041436 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATCTCAGAATGGATGTTTTCCATGGC 6041377 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947 || || || ||||||||||| | || || |||||||| |||||| Sbjct 6041376 AATTTGGAAGCCGTAGAAACAGCGGGCTTCAGTAATCTGAACTTCT 6041331 >seq722 Length=1584642 Score = 125 bits (138), Expect = 9e-24 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| ||||| ||||| ||||| || || || |||||||| ||||| | Sbjct 1256636 ACCTGAAATTCTCCCGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCGATG 1256695 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 1256696 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 1256755 Query 62508 CTATTTCTAAGACCGTA 62524 || ||||| | ||| || Sbjct 1256756 CTGTTTCTTATACCATA 1256772 Score = 100 bits (110), Expect = 4e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685 |||| || |||||||| || | || || || || | ||| || || || || || || | Sbjct 1262136 CATAGGTTTCATATGGGCCATGCTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 1262195 Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745 ||||||| ||||||||||| | ||| ||||| || ||||| || || ||||| |||| Sbjct 1262196 AATAAATAGTTTCAAAGATTTGCTTGTTTAGTAACTGGGCTTCTGGACTCTCAAAAGGAT 1262255 Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805 | | | |||||||| || || || | ||||| || || || || || || | ||| | Sbjct 1262256 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCGATTCCAATGGGGCGATGGC 1262315 Query 62806 TCTTATTAGA 62815 ||||| || Sbjct 1262316 GTTTATTTGA 1262325 Score = 96.9 bits (106), Expect = 4e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || |||||||||||| |||||||| ||||||||||| || | || || ||||| | | Sbjct 1266459 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCTCTGGCACG 1266518 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 ||||| || |||||||| ||||| || | ||| || ||| | | ||| || ||||||| Sbjct 1266519 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCA 1266578 Query 63383 CGGTTCCA 63390 || |||| Sbjct 1266579 AGGCTCCA 1266586 >seq585 Length=8822955 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 ||| ||||||||||| ||| || | ||||| || || |||||||||| || ||| Sbjct 2333511 GTTTCTTTCTATGATATATATATTATTCTGCAAGCATTTATACTGACTACTGCCGTATTT 2333452 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||| | ||||| ||| |||||||||||| |||||||||||||| ||| ||| | |||| Sbjct 2333451 CTTGGTTTGACTGCATATACTCTACAATCTAAGAGAGATTTCAGCAAATTTGGAGCAGG 2333393 Score = 86.0 bits (94), Expect = 8e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 188172 TGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCAC 188231 |||||||| |||||||| ||||||||||||| ||||| ||||| |||||||| | |||| Sbjct 2345456 TGCTCCTCGATCGAGGATGACTTCAACTATGGCAGCTGCGTGGCCTCTGCCAGTGGGCAC 2345397 Query 188232 ATACGAATGG 188241 || ||||||| Sbjct 2345396 ATTCGAATGG 2345387 Score = 82.4 bits (90), Expect = 1e-10 Identities = 83/107 (78%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 188244 TTTCTAAGAAAAGTCTACGGTATCCTTG-TCTACAATTTCCTTTAACAACGGCAACAGCT 188302 |||||||||||||||||| | |||||| ||| ||| ||| ||||| || | ||| || Sbjct 2342189 TTTCTAAGAAAAGTCTACAGCATCCTTTCTCTGCAAGTTCTCTTAACTACAGTGACATCT 2342130 Query 188303 GCAGTATTTTTATACTTTGAATGCATTCGGACATTTATACAAGGGAG 188349 | | |||||||||||||| | || ||||||||| |||| | ||| Sbjct 2342129 TCTTTTTTTTTATACTTTGAGTCTATACGGACATTTGTACATGAGAG 2342083 >seq485 Length=11789088 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 34080 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 34139 || ||||| ||||||| || ||||||| ||||||||||||||| ||||| |||||| | Sbjct 157412 ACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATGTCAGGG 157471 Query 34140 TATTGGATTGGGAAAATAACAAATC 34164 || |||||||| || || ||||||| Sbjct 157472 TACTGGATTGGAAAGATGACAAATC 157496 >seq515 Length=2727018 Score = 86.0 bits (94), Expect = 8e-12 Identities = 143/206 (69%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 31348 TGTACTTCTTCAAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCT 31407 || ||||| || | |||||||| | | || |||| ||| || ||||| || |||| ||| Sbjct 2713145 TGAACTTCCTCTATTTCTGGATCAAAAATCCGTTCATAAATGAGCTGTGCAATTCGATCA 2713204 Query 31408 CCAGTATTTACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCC 31467 || | || || | |||| | ||| ||| ||||| || | || || | ||||| Sbjct 2713205 CCCTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAATAGCACAACACCCACATTTCCT 2713264 Query 31468 CTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACCA 31524 ||||||||||| ||||| || || ||| || ||| || | ||| | || ||| Sbjct 2713265 CTATAATCTTCATCTATGACGCCAGCTCTTACATCTATGAAGTGTTTCGCAGCCAAGCCA 2713324 Query 31525 GACCTAGGAGCTATTCTACCATAGCA 31550 || | ||||||| ||| |||||||| Sbjct 2713325 GAACGGGGAGCTACTCTTCCATAGCA 2713350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629805956247120