Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09-
06] 1,479 sequences; 2,391,082,183 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq485 109 5e-19
seq722 102 8e-17
seq1344 98.7 9e-16
>seq485
Length=11789088
Score = 109 bits (120), Expect = 5e-19
Identities = 102/130 (78%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711
|||| ||||| || || |||||||| ||||| || | ||| ||||| | |||| ||| |
Sbjct 143825 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCT 143884
Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771
| | ||| |||||||||||||| || || || ||||| || || || ||||||||||| |
Sbjct 143885 TCAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATCCCTTCTACAGCTGCAAAAG 143944
Query 11772 CTACTACTCT 11781
| || |||||
Sbjct 143945 CCACCACTCT 143954
>seq722
Length=1584642
Score = 102 bits (112), Expect = 8e-17
Identities = 104/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197
|||||||| ||||| || || ||||| | ||||| || ||||| ||||| ||||| |||
Sbjct 1256636 ACCTGAAATTCTCCCGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCGATG 1256695
Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257
||||||||||| | | || |||| || || |||||||||||||| || || || |
Sbjct 1256696 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 1256755
Query 37258 CTATTTCTCAATCCAT 37273
|| ||||| | ||||
Sbjct 1256756 CTGTTTCTTATACCAT 1256771
Score = 89.7 bits (98), Expect = 5e-13
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTA 38472
|| || || || || | || ||||| ||||| | ||||| || || || | | ||||
Sbjct 1273072 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGATTA 1273131
Query 38473 TATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGC 38532
|||||||| || || |||| ||||| | | ||||| || | |||||||||||| | |
Sbjct 1273132 TATGTTTCAATAGCAGCATCAATATCTTCTTCATGAATCCCCACAGATACCCTCATCAAC 1273191
Query 38533 ATATGTTGTGGTCTTTC 38549
||||| |||||||||||
Sbjct 1273192 ATATGCTGTGGTCTTTC 1273208
>seq1344
Length=6361600
Score = 98.7 bits (108), Expect = 9e-16
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713
|| ||||| || || |||||||| ||||| || | || ||||||| || ||||| ||
Sbjct 6043429 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCTTG 6043370
Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773
| ||| ||||| | || || |||||||||||||| ||||| ||||| || ||||| ||
Sbjct 6043369 AGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGGCC 6043310
Query 11774 ACTACTCTTTCTCC 11787
|| || | |||||
Sbjct 6043309 ACAACCCGCTCTCC 6043296
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468516138147760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |