Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09-
06] 1,479 sequences; 2,391,082,183 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq585 187 3e-42
seq1344 132 6e-26
seq722 131 2e-25
seq485 91.5 2e-13
>seq585
Length=8822955
Score = 187 bits (206), Expect = 3e-42
Identities = 154/188 (82%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 9231 TTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAAG 9290
|| |||||| | ||||||||| | | |||||||||| ||| |||||||||| |||||||
Sbjct 2326630 TTTTTATTAACTGCTTCCAAAAACCGCAACAGATGCAGGAATAGATTGATGACATCCAAG 2326689
Query 9291 TAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTGC 9350
|||| |||| | ||||| ||||| |||||||| || ||| |||| || || |||||
Sbjct 2326690 TAGAGGCTGATGGCAGCTAATACATACTCTTCAGGTGACAGCCTATGCATCAGGGAGTGT 2326749
Query 9351 GTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTCC 9410
||||||||||| |||||||||||||| | |||||| || | ||||| || ||||| ||||
Sbjct 2326750 GTGTCATAGATGATGAATCCGCAGAAAAGAAGGGCTCCCACAGCAGCCAAGACCAACTCC 2326809
Query 9411 ACTGTTTC 9418
||||||||
Sbjct 2326810 ACTGTTTC 2326817
Score = 134 bits (148), Expect = 2e-26
Identities = 101/119 (85%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539
|||||||||| ||| |||||||||||||| |||||||||||||||||||||| | |||||
Sbjct 2333393 CCTGCTCCAAATTTGCTGAAATCTCTCTTAGATTGTAGAGTATATGCAGTCAAACCAAGA 2333452
Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598
|| || ||||||||||| || || ||||||| || | || | ||||||||||| |||
Sbjct 2333453 AATACGGCAGTAGTCAGTATAAATGCTTGCAGAATAATATATATATCATAGAAAGAAAC 2333511
Score = 102 bits (112), Expect = 1e-16
Identities = 85/102 (83%), Gaps = 3/102 (3%)
Strand=Plus/Plus
Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906
||||||| |||||| |||||||||| ||||| ||||||||||||||||||| |||||||
Sbjct 2345387 CCATTCGAATGTGCCCACTGGCAGAGGCCACGCAGCTGCCATAGTTGAAGTCATCCTCGA 2345446
Query 9907 TGGAGGAGCACGCGTA--GAGGCTCGGCAT-GGCCATGGCGG 9945
| |||||||| | ||| | || |||| | ||||||| |||
Sbjct 2345447 TCGAGGAGCAGGGGTACCGGGGGTCGGGGTCGGCCATGTCGG 2345488
Score = 86.0 bits (94), Expect = 8e-12
Identities = 83/107 (78%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 9738 CTCCCTTGTATAATTTTCCGCATGCAGTCAAAGTATAAAAATACTGCAGTTGTTGCCGTT 9797
||| | |||| || | |||| || | |||||||||||||| | | || ||| | ||
Sbjct 2342083 CTCTCATGTACAAATGTCCGTATAGACTCAAAGTATAAAAAAAAAGAAGATGTCACTGTA 2342142
Query 9798 GTTAAAAGAAATTGTAGACAAAGGATACCGTAGACTTTTCTTAGAAA 9844
||||| |||| ||| ||| ||||||| | ||||||||||||||||||
Sbjct 2342143 GTTAAGAGAACTTGCAGAGAAAGGATGCTGTAGACTTTTCTTAGAAA 2342189
>seq1344
Length=6361600
Score = 132 bits (146), Expect = 6e-26
Identities = 111/136 (82%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
|||| ||||| ||||| | ||| |||||||||||||| || ||||| ||||| || || |
Sbjct 6043431 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCT 6043372
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| ||||| ||||| ||||| || || ||||||||||| |||||||| ||||| |||||||
Sbjct 6043371 TGAGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 6043312
Query 36300 CAATAAGTCTCTCTCC 36315
| | || | ||||||
Sbjct 6043311 CCACAACCCGCTCTCC 6043296
Score = 102 bits (112), Expect = 1e-16
Identities = 86/106 (81%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477
|||||||| || || ||||| | ||||||||||| || ||||| |||||||| |||||
Sbjct 6041436 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATCTCAGAATGGATGTTTTCCATGGC 6041377
Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523
||||| || ||||||||||| | || || |||||||| ||||||
Sbjct 6041376 AATTTGGAAGCCGTAGAAACAGCGGGCTTCAGTAATCTGAACTTCT 6041331
>seq722
Length=1584642
Score = 131 bits (144), Expect = 2e-25
Identities = 111/137 (81%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240
|| ||||||||||| ||||| ||||| ||||| || || || |||||||| ||||| |
Sbjct 1256636 ACCTGAAATTCTCCCGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCGATG 1256695
Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300
|||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | ||||
Sbjct 1256696 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 1256755
Query 65301 CTATTTCTAAGACCGTA 65317
|| ||||| | ||| ||
Sbjct 1256756 CTGTTTCTTATACCATA 1256772
Score = 96.9 bits (106), Expect = 5e-15
Identities = 98/128 (77%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115
|| |||||||||||| |||||||| ||||||||||| || | || | ||||||| |
Sbjct 1266459 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCTCTGGCACG 1266518
Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175
||||| || |||||||| ||||| || | ||| || ||| | | ||| || |||||||
Sbjct 1266519 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCA 1266578
Query 66176 CGGTTCCA 66183
|| ||||
Sbjct 1266579 AGGCTCCA 1266586
Score = 87.8 bits (96), Expect = 2e-12
Identities = 119/166 (72%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858
|||| || | ||| |||||||||||||| | || || || || || || || || | |
Sbjct 1278590 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTGGAGACCGCAATCCTTGCTGCCAGGA 1278649
Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918
||||||| || || || | ||||| | || || ||| |||| || |||| ||| || |
Sbjct 1278650 TGGCATAGTCAGGGTGCTTGGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTATCTA 1278709
Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964
||| || || || || ||| | |||| || ||||| || |||||
Sbjct 1278710 GTTCCACAGTGGTGACCCCACTGTATAAGCCCTGGATTACTTTCAT 1278755
>seq485
Length=11789088
Score = 91.5 bits (100), Expect = 2e-13
Identities = 71/85 (84%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 36656 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 36715
|| ||||| ||||||| || ||||||| ||||||||||||||| ||||| |||||| |
Sbjct 157412 ACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATGTCAGGG 157471
Query 36716 TATTGAATTGGAAAAATAACAAATC 36740
|| || |||||||| || |||||||
Sbjct 157472 TACTGGATTGGAAAGATGACAAATC 157496
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658160632030360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |