Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09-
06] 1,479 sequences; 2,391,082,183 total letters
Query= NC_003401.1
Length=133719
Score E
Sequences producing significant alignments: (Bits) Value
seq489 138 1e-27
seq1033 100 2e-16
seq694 86.0 5e-12
>seq489
Length=2104609
Score = 138 bits (152), Expect = 1e-27
Identities = 129/164 (79%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048
||||||| |||| ||| ||||||| || || || |||| ||||||||||||||| || |
Sbjct 942547 TCAGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGG 942606
Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108
| || || ||||||||||| | ||||||||||||| |||||||||||| || ||
Sbjct 942607 GCACACCCAGGCCCATGTCTCCTGACCTCTGGTACAACTGGCAGGACAGTTCACCGTTCA 942666
Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152
||||||| ||||| || | | | || || ||||| || ||||||
Sbjct 942667 CCACGTAGAACTGGCAAAGAGCATGGCACGGAGGTAGGGCCATC 942710
>seq1033
Length=8840225
Score = 100 bits (110), Expect = 2e-16
Identities = 161/230 (70%), Gaps = 1/230 (0%)
Strand=Plus/Minus
Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAA- 3021
|| || ||||| || || || | || ||||| || | ||| || || ||||| | |
Sbjct 4779348 TTTAAGGCATCATCCAGACTTTTAGCAAGAAAATGAGTTCCTTGTGGAGGTTCCTGGAGG 4779289
Query 3022 TTCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGA 3081
|||||| || | || ||||||||||||| | | ||| | ||||| | || || ||
Sbjct 4779288 TTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTTGATTCTTCTTGGGAATAGA 4779229
Query 3082 AAACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGA 3141
|||||||| | | |||||||| |||| ||||| || |||| | || |||| || |
Sbjct 4779228 GAACCATGTCTTCCTACCCATAATCACCAAATTCTGTTTACCTCCTACTGATGAGGTTGT 4779169
Query 3142 CGTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCA 3191
|||||| | || |||||| | | ||| || || || |||||| ||||
Sbjct 4779168 GGTCATTCTTTGGAAATACTTGAATTCATTCCTGAGCGGCGGCCAGGGCA 4779119
>seq694
Length=2958536
Score = 86.0 bits (94), Expect = 5e-12
Identities = 127/180 (71%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 20945 GTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTG 21004
||||| || || || ||||| || || | ||||| | || ||||||| ||| |||
Sbjct 60125 GTAAATATGTGCATCTCCCAAAGTATGTATGAAGTCACTGGGCTTCAGGCCTGTGGTGTG 60066
Query 21005 AGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCAT 21064
| ||| || || || ||||| ||||||| || || | || || | ||||||||
Sbjct 60065 TACCATCCTGTAGGTGAGCAGGGCATAGCTGGTGACATTGGAGGGCACAACCAGGCCCAT 60006
Query 21065 GTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACA 21124
||| | || ||| |||| ||||||||||||||||| || ||| ||| ||||| ||
Sbjct 60005 GTCTCCTGAGCTCCGGTATAGCTGGCAGGACAGCTCACCATTTTCCAGGTAGAACTGGCA 59946
Score = 82.4 bits (90), Expect = 7e-11
Identities = 110/153 (72%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 21364 CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACGCCGCGGCGCGACAGTTCGG 21423
|||| | | | | |||||| | | |||||| ||||| || || | |||| |||
Sbjct 59724 CCAAGAGGTCTCAGGACCCATTTGAGTCCCAGATTTTCACTCCCTTGGAAGACAATTCCC 59665
Query 21424 TGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCTCCACGACGCCCCTCCAAAACA 21483
| || ||||| ||| |||||||||||||||||||||||| || ||| || | || |
Sbjct 59664 AAGCGTTTGTGGATCCCTTGATAAACCACAGCAACTCCTCCAAAACACCCTTCTAGAATA 59605
Query 21484 CCCTTTTGGTGGTTAACAGAGGAAACTCGTCCC 21516
| |||||| || | ||||||||| || ||||
Sbjct 59604 CAGGTTTGGTTGTCAGCAGAGGAAATTCATCCC 59572
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427768289203920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |