Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq489 138 1e-27 seq1033 100 2e-16 seq694 86.0 5e-12 >seq489 Length=2104609 Score = 138 bits (152), Expect = 1e-27 Identities = 129/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 ||||||| |||| ||| ||||||| || || || |||| ||||||||||||||| || | Sbjct 942547 TCAGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGG 942606 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || ||||||||||| | ||||||||||||| |||||||||||| || || Sbjct 942607 GCACACCCAGGCCCATGTCTCCTGACCTCTGGTACAACTGGCAGGACAGTTCACCGTTCA 942666 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 ||||||| ||||| || | | | || || ||||| || |||||| Sbjct 942667 CCACGTAGAACTGGCAAAGAGCATGGCACGGAGGTAGGGCCATC 942710 >seq1033 Length=8840225 Score = 100 bits (110), Expect = 2e-16 Identities = 161/230 (70%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAA- 3021 || || ||||| || || || | || ||||| || | ||| || || ||||| | | Sbjct 4779348 TTTAAGGCATCATCCAGACTTTTAGCAAGAAAATGAGTTCCTTGTGGAGGTTCCTGGAGG 4779289 Query 3022 TTCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGA 3081 |||||| || | || ||||||||||||| | | ||| | ||||| | || || || Sbjct 4779288 TTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTTGATTCTTCTTGGGAATAGA 4779229 Query 3082 AAACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGA 3141 |||||||| | | |||||||| |||| ||||| || |||| | || |||| || | Sbjct 4779228 GAACCATGTCTTCCTACCCATAATCACCAAATTCTGTTTACCTCCTACTGATGAGGTTGT 4779169 Query 3142 CGTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCA 3191 |||||| | || |||||| | | ||| || || || |||||| |||| Sbjct 4779168 GGTCATTCTTTGGAAATACTTGAATTCATTCCTGAGCGGCGGCCAGGGCA 4779119 >seq694 Length=2958536 Score = 86.0 bits (94), Expect = 5e-12 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 20945 GTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTG 21004 ||||| || || || ||||| || || | ||||| | || ||||||| ||| ||| Sbjct 60125 GTAAATATGTGCATCTCCCAAAGTATGTATGAAGTCACTGGGCTTCAGGCCTGTGGTGTG 60066 Query 21005 AGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCAT 21064 | ||| || || || ||||| ||||||| || || | || || | |||||||| Sbjct 60065 TACCATCCTGTAGGTGAGCAGGGCATAGCTGGTGACATTGGAGGGCACAACCAGGCCCAT 60006 Query 21065 GTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACA 21124 ||| | || ||| |||| ||||||||||||||||| || ||| ||| ||||| || Sbjct 60005 GTCTCCTGAGCTCCGGTATAGCTGGCAGGACAGCTCACCATTTTCCAGGTAGAACTGGCA 59946 Score = 82.4 bits (90), Expect = 7e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 21364 CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACGCCGCGGCGCGACAGTTCGG 21423 |||| | | | | |||||| | | |||||| ||||| || || | |||| ||| Sbjct 59724 CCAAGAGGTCTCAGGACCCATTTGAGTCCCAGATTTTCACTCCCTTGGAAGACAATTCCC 59665 Query 21424 TGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCTCCACGACGCCCCTCCAAAACA 21483 | || ||||| ||| |||||||||||||||||||||||| || ||| || | || | Sbjct 59664 AAGCGTTTGTGGATCCCTTGATAAACCACAGCAACTCCTCCAAAACACCCTTCTAGAATA 59605 Query 21484 CCCTTTTGGTGGTTAACAGAGGAAACTCGTCCC 21516 | |||||| || | ||||||||| || |||| Sbjct 59604 CAGGTTTGGTTGTCAGCAGAGGAAATTCATCCC 59572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427768289203920