Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09-
06] 1,479 sequences; 2,391,082,183 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq1344 147 3e-30
seq722 122 1e-22
seq515 96.9 5e-15
seq485 93.3 6e-14
>seq1344
Length=6361600
Score = 147 bits (162), Expect = 3e-30
Identities = 114/136 (84%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041
|||| ||||| ||||| ||||| |||||||||||||| || ||||| ||||| || || |
Sbjct 6043431 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCT 6043372
Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101
| ||||| ||||| ||||| || || |||||||||||||||||||| ||||| |||||||
Sbjct 6043371 TGAGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 6043312
Query 50102 CAACAAGTCTCTCTCC 50117
| |||| | ||||||
Sbjct 6043311 CCACAACCCGCTCTCC 6043296
Score = 96.9 bits (106), Expect = 5e-15
Identities = 85/106 (80%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279
|||||||| ||||| || || | ||||||||||| || ||||| |||||||| |||||
Sbjct 6041436 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATCTCAGAATGGATGTTTTCCATGGC 6041377
Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325
|| || || ||||||||||| | || || |||||||| ||||||
Sbjct 6041376 AATTTGGAAGCCGTAGAAACAGCGGGCTTCAGTAATCTGAACTTCT 6041331
>seq722
Length=1584642
Score = 122 bits (134), Expect = 1e-22
Identities = 109/137 (80%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119
|| ||||||||||| ||||| ||||| ||||| || || || |||||||| ||||| |
Sbjct 1256636 ACCTGAAATTCTCCCGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCGATG 1256695
Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179
|| ||||||||||||| ||| ||||||||||| || || ||||| || || | | ||||
Sbjct 1256696 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 1256755
Query 79180 CTATTTCTAAGACCGTA 79196
|| ||||| | ||| ||
Sbjct 1256756 CTGTTTCTTATACCATA 1256772
Score = 93.3 bits (102), Expect = 6e-14
Identities = 95/124 (77%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998
||||||||||| |||||||| ||||||||||| || | || || ||||||| | ||
Sbjct 1266463 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCTCTGGCACGCTGT 1266522
Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058
|| || |||||||| ||||| || | ||| || ||| | | ||| || ||||||| ||
Sbjct 1266523 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCAAGGC 1266582
Query 80059 TCCA 80062
||||
Sbjct 1266583 TCCA 1266586
>seq515
Length=2727018
Score = 96.9 bits (106), Expect = 5e-15
Identities = 174/254 (69%), Gaps = 3/254 (1%)
Strand=Plus/Plus
Query 47704 CCAGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCCTCC 47763
||||| || ||||| ||| | || || || || ||| | | || ||||||||
Sbjct 2713097 CCAGTAGAACCAAAACCTCCTGAACCCCTTTCAGTGTCATCCAAAACCTGAACTTCCTCT 2713156
Query 47764 AGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTACA 47823
| |||||||| | | || |||| ||| || ||||| || |||| ||| ||| | || ||
Sbjct 2713157 ATTTCTGGATCAAAAATCCGTTCATAAATGAGCTGTGCAATTCGATCACCCTTTTTGACT 2713216
Query 47824 TTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTTCG 47883
| ||| | ||| ||| ||||| || | || || | ||||| |||||||||||
Sbjct 2713217 TCAAACTTTTCTTTGCCAAAATTAAATAGCACAACACCCACATTTCCTCTATAATCTTCA 2713276
Query 47884 TCTATTACACCACCTCCTATATCAAT---GCCTTTTAGTGACAGTCCAGACCTAGGAGCT 47940
||||| || ||| ||| || ||| || | ||| | || ||||| | ||||||
Sbjct 2713277 TCTATGACGCCAGCTCTTACATCTATGAAGTGTTTCGCAGCCAAGCCAGAACGGGGAGCT 2713336
Query 47941 ATTCTACCATAGCA 47954
| ||| ||||||||
Sbjct 2713337 ACTCTTCCATAGCA 2713350
>seq485
Length=11789088
Score = 93.3 bits (102), Expect = 6e-14
Identities = 72/86 (84%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 50457 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 50516
||| ||||| ||||||| || ||||||| ||||||||||||||| ||||| |||||| |
Sbjct 157411 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATGTCAGG 157470
Query 50517 ATATTGGATTGGGAAAATAACAAATC 50542
|| |||||||| || || |||||||
Sbjct 157471 GTACTGGATTGGAAAGATGACAAATC 157496
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718255521005560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |