Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq1477 86.0 5e-12 >seq1477 Length=8748460 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||| ||||| |||| | ||| | ||| |||||| || | ||||| || ||| Sbjct 7843773 CCACCACAAAGTCTCAACA--AGATGAA--GTGGACTCCTTCTGAATGTTGTAGTCAGAC 7843828 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || |||||| | || |||| ||| ||||| ||||| ||||| | ||| |||| | || Sbjct 7843829 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACTCTGCTGATAAGGAGGA 7843888 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||| || || | ||| |||| | || | | ||| || | ||||| Sbjct 7843889 ATTTCTTCCTTATCCCGAATCTTGGCTTTCATACTTTCTATTGTATCCGAGGGTTCGACC 7843948 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || || | || || ||||| || || |||||||||||| ||||||| || Sbjct 7843949 TCAACACTGATGGTCTTTCCTGTAAGGGTTTTCACAAAATTTTGCATCTT 7843998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381362725693782