Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09-
06] 1,479 sequences; 2,391,082,183 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq566 149 1e-30
seq825 122 2e-22
seq536 122 2e-22
seq485 120 7e-22
seq738 107 4e-18
seq648 102 2e-16
seq602 100 7e-16
seq890 96.9 8e-15
seq1316 95.1 3e-14
seq1344 89.7 1e-12
seq747 89.7 1e-12
seq424 89.7 1e-12
>seq566
Length=2972453
Score = 149 bits (164), Expect = 1e-30
Identities = 169/226 (75%), Gaps = 2/226 (1%)
Strand=Plus/Plus
Query 104334 CCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATA 104393
|||||| || | ||| || ||||| | || || |||||||| || || || ||||| |
Sbjct 801016 CCCCTC--AGACGAAGAACCAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAA 801073
Query 104394 GAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTA 104453
|||| | || || || || || || || ||||| || |||||||| || ||||| || |
Sbjct 801074 GAGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGA 801133
Query 104454 TTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCT 104513
| |||||||||||||| ||||| || || || ||||| | ||| || || || || ||||
Sbjct 801134 TGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACCT 801193
Query 104514 CTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
| || || || ||||| || || || || || || || ||||||||
Sbjct 801194 CCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 801239
>seq825
Length=8281254
Score = 122 bits (134), Expect = 2e-22
Identities = 150/205 (73%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413
||||| | || || || || ||||| || ||||||||| ||| || ||||| |||
Sbjct 4962367 AGATGAAGAGTGGACTCCTTTTGAATGCTACAGTCAGATAAAGTATGTCCATCTTCCAGT 4962426
Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473
|| || | || || || || || || ||||||||||| |||||| ||||||||||||
Sbjct 4962427 TGCTTGCAAGAGAAGATCAGTCTGTGCTGATCAGGAGGAGTTCCTTTCTTATCCTGAATC 4962486
Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533
|| || ||||||||||||| ||||| ||||| ||||| || || || |||| |
Sbjct 4962487 TTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCAACCTCAAGAGTGATGATCTTCCTC 4962546
Query 104534 GTAAGTGTTTTTACAAATATCTGCA 104558
|| | ||||| | || |||||||
Sbjct 4962547 ATATGGGTTTTCATGAAAATCTGCA 4962571
>seq536
Length=25944906
Score = 122 bits (134), Expect = 2e-22
Identities = 155/213 (73%), Gaps = 8/213 (4%)
Strand=Plus/Minus
Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410
|| ||||| | || || || || ||||| || |||||| | || | || |||||
Sbjct 23770634 ACAAGATGGAGAGTGGACTCCTTTTGAATGTTGTAGTCAAA----GTACATCCATCTTCC 23770579
Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470
||||| || |||||||| || | ||||| ||||||||| | |||||| |||||||
Sbjct 23770578 AGTTGCTTGCCAGCAAAGATCGGTCTCTGCTGATCAGGAAGAGTTCCTT----ATCCTGA 23770523
Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530
||||| || || |||||||||| |||| |||||| ||||| || || || |||||
Sbjct 23770522 ATCTTGGCCTTCACATTTTCTATTGTATTTGAAGGTTCAACCTCAAGAGTGATGGTCTTC 23770463
Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
|| |||| ||||| || || ||| || | |||
Sbjct 23770462 CCCATAAGAGTTTTCACGAAAATCAGCCTCTTG 23770430
>seq485
Length=11789088
Score = 120 bits (132), Expect = 7e-22
Identities = 101/124 (81%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197
|| |||||||| ||||||||||| || ||||| || || |||||||| ||||| || |||
Sbjct 143948 GTGGCTTTTGCAGCTGTAGAAGGGATTTTCTTCTCAGGATCTTTTGCTGCTATATTCTGG 143889
Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257
||||||||||||| |||||||| ||| | ||||| || || ||| | || ||||| ||
Sbjct 143888 CTGAAGAAAAGAGGTCTTATGCCTGGACTCACTTTTTCCAATGAACTCATCAGCAGAGAT 143829
Query 269258 GAAG 269261
||||
Sbjct 143828 GAAG 143825
>seq738
Length=7307337
Score = 107 bits (118), Expect = 4e-18
Identities = 145/200 (73%), Gaps = 3/200 (2%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTT-CC 104421
|| ||| ||||||| | | || ||||| ||||| | | ||||| || | ||| ||
Sbjct 4320456 GTTGATCCTTTCTGGGTGCTGTAATCAGAAAGAGTGCGGCTATCTTCCAGCAGCTTTGCC 4320397
Query 104422 AGCAAAAA--TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
||||||| | |||||||| || ||||| || ||||||||||| || ||||| |||
Sbjct 4320396 TGCAAAAAGGTGAGCCTCTGCTGGTCAGGGCAGATCCCTTCTTTATCTTGGATCTTAGCT 4320337
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|| ||||| || | ||| || | || || ||||| || || | ||||| ||||| ||
Sbjct 4320336 TTCACATTCTCAATGGTGTCAGTGGGCTCCACCTCCAGAGTGACGGTCTTGCCAGTCAGG 4320277
Query 104540 GTTTTTACAAATATCTGCAT 104559
|| || |||| ||||||||
Sbjct 4320276 GTCTTCGCAAACATCTGCAT 4320257
>seq648
Length=20061788
Score = 102 bits (112), Expect = 2e-16
Identities = 118/159 (74%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 104405 TCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTA 104464
||||| ||||| || ||||| || || || ||||| |||||| |||| |||||||| |||
Sbjct 17362450 TCTTCCAGTTGCTTGCCAGCCAAGATCAGTCTCTGATGATCAAGAGGAATTCCTTCCTTA 17362509
Query 104465 TCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATA 104524
|| || ||||| || ||||||||||||| |||| ||||| | ||| || |||
Sbjct 17362510 TCTTGGATCTTGGCCTTTACATTTTCTATTATATCCAAGGGTTCAATCTCGCAAGTGATA 17362569
Query 104525 GTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
|||| || ||| ||||| | | |||||||| |||
Sbjct 17362570 ATCTTCCCCATAAAAGTTTTCATGGAAATCTGCATCTTG 17362608
>seq602
Length=3264241
Score = 100 bits (110), Expect = 7e-16
Identities = 143/199 (72%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 104366 GATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCA 104425
|| || || ||||| || ||||||| | || || ||||| | ||| | ||||||
Sbjct 2398618 GACTCCTTTTGAATGTTGTAGTCAGTCAAAGGATGTCCATCTTCAA-TTGCCTGCCAGCA 2398560
Query 104426 AAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTG-CTTTTAC 104484
| || || ||||| ||| ||||||| ||| |||| |||||||||||| | | |||| ||
Sbjct 2398559 AGGATCAGTCTCTGCTGAACAGGAGGAATTTCTTCCTTATCCTGAATCCTGGCCTTTAAC 2398500
Query 104485 ATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTT 104544
|||| ||| ||||| ||||| ||||| || || || ||||| | |||| ||||
Sbjct 2398499 ATTTCCTATTGTATCCGAGGGTTCCACCTCGAGAGTGATGGTCTTCACCCTAAGAGTTTC 2398440
Query 104545 TACAAATATCTGCATTTTG 104563
|| | |||| ||| |||
Sbjct 2398439 CACGGAAATCTACATCTTG 2398421
>seq890
Length=2318022
Score = 96.9 bits (106), Expect = 8e-15
Identities = 151/212 (71%), Gaps = 3/212 (1%)
Strand=Plus/Minus
Query 104360 AATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTT 104419
|| || ||||||||||| | ||| ||| | || ||||| | || || || || |||||
Sbjct 119636 AAGGTGGATTCTTTCTGGAGATTGTAGCCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTG 119577
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
|| ||||||||||| | ||| || | ||| || || || || || || || | ||||| |
Sbjct 119576 CCCGCAAAAATTAGACGCTGCTGGTGAGGTGGGATGCCCTCCTTGTCTTGGA-CTTTGGT 119518
Query 104480 TTT-ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAG 104538
||| ||||| || ||| || | || | ||| || || ||||| ||||| | ||
Sbjct 119517 TTTGACATTCTCAGTGGTGTCACCGGGCTTGACCGTGAGGGTGATAGTTTTACCCATCAG 119458
Query 104539 TGTTTTTACAAATATCTGCAT-TTTGTGTACA 104569
| || ||||| |||||||| | ||||| ||
Sbjct 119457 AGGCTTCACAAAGATCTGCATCTCTGTGTCCA 119426
>seq1316
Length=11094556
Score = 95.1 bits (104), Expect = 3e-14
Identities = 117/158 (74%), Gaps = 4/158 (3%)
Strand=Plus/Plus
Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461
|| ||||| ||||| || |||||||| || || |||| ||| ||||| ||||||||
Sbjct 7971079 CCATCTTCCAGTTGCTT-CCAGCAAAGATCAGTCTCTAATGACCAGGA---ATTCCTTCC 7971134
Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521
| |||||||||||| || || ||||||||| |||| ||||| |||| || ||
Sbjct 7971135 TGATCCTGAATCTTGGCCTTCACATTTTCTGTTGTATTTGAGGGTTCAGCCTCAAGAGTG 7971194
Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| |||| | |||| ||||| || || ||||||||
Sbjct 7971195 ATGATCTTCTCCATAAGGGTTTTCACGAAAATCTGCAT 7971232
>seq1344
Length=6361600
Score = 89.7 bits (98), Expect = 1e-12
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 269492 GTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTC 269551
|| |||||||| ||| |||||||||||||| ||| | ||||| ||| |||| |||||
Sbjct 6044798 GTAGAAAATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGGAAGACTAACTTCTTT 6044857
Query 269552 GAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTCTACTAAAGAAGAAAATATT 269611
|||||| | ||| | | ||||||| ||||| || ||||| | | | ||| ||| |
Sbjct 6044858 GAGAAGAGAGTAGGCGAGTATCAGAGGATGGGAGTGATGTCAAGTCCAACAGAGAATTCT 6044917
Query 269612 TTCACTACAGATGCAGAATTCTAA 269635
|| || ||||| || ||||||
Sbjct 6044918 TTTACCTTGGATGCTGACTTCTAA 6044941
>seq747
Length=14734251
Score = 89.7 bits (98), Expect = 1e-12
Identities = 114/157 (73%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553
|||||||| | | | |||||||| | || || | || || | || || ||||| |
Sbjct 10993016 TGGTGGTACTTTGTATCTAAAGGGGTTGAGTATTTGGACACCGTATTTTTTATCCTGAGG 10992957
Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTACTTTG 78613
|||||| || ||| | ||| || |||||||||||||| | ||| |||||||| ||
Sbjct 10992956 AAGAAAAACAACCAAGTCTCTTTCCTTCATGTATATCATCACTGTACAATGTTTACACTG 10992897
Query 78614 GGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650
| ||||| || ||||| ||| |||| || |||||||
Sbjct 10992896 TGGTGGATTGGAATTAAGTGGGTCGCCGGGGGACAAG 10992860
>seq424
Length=11562000
Score = 89.7 bits (98), Expect = 1e-12
Identities = 148/213 (69%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || || | || || || |||||||| ||||| ||||| || | ||| |||||
Sbjct 7322008 AAGGACCAGGTTCAAGGTGGACTCTTTCTGGATATTGTAGTCTGAGAAAGTGTGGCCGTC 7321949
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
|| || ||||| || || |||| || | | |||| ||| | || || || || || ||
Sbjct 7321948 CTCCAGCTGTTTGCCCACACAAATCAGACGCCGTTGGTCAAGCGGGATGCCCTCCTTGTC 7321889
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
|| || || ||||| || || || | |||||| | | || || || || || || ||
Sbjct 7321888 TTGGATTTTGGCTTTGACCTTCTCCATGGTATCATTGGTCTCAACGTCAAGGGTGATGGT 7321829
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||| || | || || ||||||||||||||
Sbjct 7321828 CTTGCCCATCCGTCTTC--ACAAATATCTGCAT 7321798
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151376581360132
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