Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq566 149 1e-30 seq825 122 2e-22 seq536 122 2e-22 seq485 120 7e-22 seq738 107 4e-18 seq648 102 2e-16 seq602 100 7e-16 seq890 96.9 8e-15 seq1316 95.1 3e-14 seq1344 89.7 1e-12 seq747 89.7 1e-12 seq424 89.7 1e-12 >seq566 Length=2972453 Score = 149 bits (164), Expect = 1e-30 Identities = 169/226 (75%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 104334 CCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATA 104393 |||||| || | ||| || ||||| | || || |||||||| || || || ||||| | Sbjct 801016 CCCCTC--AGACGAAGAACCAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAA 801073 Query 104394 GAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTA 104453 |||| | || || || || || || || ||||| || |||||||| || ||||| || | Sbjct 801074 GAGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGA 801133 Query 104454 TTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCT 104513 | |||||||||||||| ||||| || || || ||||| | ||| || || || || |||| Sbjct 801134 TGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACCT 801193 Query 104514 CTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | || || || ||||| || || || || || || || |||||||| Sbjct 801194 CCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 801239 >seq825 Length=8281254 Score = 122 bits (134), Expect = 2e-22 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413 ||||| | || || || || ||||| || ||||||||| ||| || ||||| ||| Sbjct 4962367 AGATGAAGAGTGGACTCCTTTTGAATGCTACAGTCAGATAAAGTATGTCCATCTTCCAGT 4962426 Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || | || || || || || || ||||||||||| |||||| |||||||||||| Sbjct 4962427 TGCTTGCAAGAGAAGATCAGTCTGTGCTGATCAGGAGGAGTTCCTTTCTTATCCTGAATC 4962486 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 || || ||||||||||||| ||||| ||||| ||||| || || || |||| | Sbjct 4962487 TTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCAACCTCAAGAGTGATGATCTTCCTC 4962546 Query 104534 GTAAGTGTTTTTACAAATATCTGCA 104558 || | ||||| | || ||||||| Sbjct 4962547 ATATGGGTTTTCATGAAAATCTGCA 4962571 >seq536 Length=25944906 Score = 122 bits (134), Expect = 2e-22 Identities = 155/213 (73%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || || || || ||||| || |||||| | || | || ||||| Sbjct 23770634 ACAAGATGGAGAGTGGACTCCTTTTGAATGTTGTAGTCAAA----GTACATCCATCTTCC 23770579 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || |||||||| || | ||||| ||||||||| | |||||| ||||||| Sbjct 23770578 AGTTGCTTGCCAGCAAAGATCGGTCTCTGCTGATCAGGAAGAGTTCCTT----ATCCTGA 23770523 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || || |||||||||| |||| |||||| ||||| || || || ||||| Sbjct 23770522 ATCTTGGCCTTCACATTTTCTATTGTATTTGAAGGTTCAACCTCAAGAGTGATGGTCTTC 23770463 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || |||| ||||| || || ||| || | ||| Sbjct 23770462 CCCATAAGAGTTTTCACGAAAATCAGCCTCTTG 23770430 >seq485 Length=11789088 Score = 120 bits (132), Expect = 7e-22 Identities = 101/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 || |||||||| ||||||||||| || ||||| || || |||||||| ||||| || ||| Sbjct 143948 GTGGCTTTTGCAGCTGTAGAAGGGATTTTCTTCTCAGGATCTTTTGCTGCTATATTCTGG 143889 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||||||||| |||||||| ||| | ||||| || || ||| | || ||||| || Sbjct 143888 CTGAAGAAAAGAGGTCTTATGCCTGGACTCACTTTTTCCAATGAACTCATCAGCAGAGAT 143829 Query 269258 GAAG 269261 |||| Sbjct 143828 GAAG 143825 >seq738 Length=7307337 Score = 107 bits (118), Expect = 4e-18 Identities = 145/200 (73%), Gaps = 3/200 (2%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTT-CC 104421 || ||| ||||||| | | || ||||| ||||| | | ||||| || | ||| || Sbjct 4320456 GTTGATCCTTTCTGGGTGCTGTAATCAGAAAGAGTGCGGCTATCTTCCAGCAGCTTTGCC 4320397 Query 104422 AGCAAAAA--TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||||| | |||||||| || ||||| || ||||||||||| || ||||| ||| Sbjct 4320396 TGCAAAAAGGTGAGCCTCTGCTGGTCAGGGCAGATCCCTTCTTTATCTTGGATCTTAGCT 4320337 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || ||||| || | ||| || | || || ||||| || || | ||||| ||||| || Sbjct 4320336 TTCACATTCTCAATGGTGTCAGTGGGCTCCACCTCCAGAGTGACGGTCTTGCCAGTCAGG 4320277 Query 104540 GTTTTTACAAATATCTGCAT 104559 || || |||| |||||||| Sbjct 4320276 GTCTTCGCAAACATCTGCAT 4320257 >seq648 Length=20061788 Score = 102 bits (112), Expect = 2e-16 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 104405 TCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTA 104464 ||||| ||||| || ||||| || || || ||||| |||||| |||| |||||||| ||| Sbjct 17362450 TCTTCCAGTTGCTTGCCAGCCAAGATCAGTCTCTGATGATCAAGAGGAATTCCTTCCTTA 17362509 Query 104465 TCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATA 104524 || || ||||| || ||||||||||||| |||| ||||| | ||| || ||| Sbjct 17362510 TCTTGGATCTTGGCCTTTACATTTTCTATTATATCCAAGGGTTCAATCTCGCAAGTGATA 17362569 Query 104525 GTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 |||| || ||| ||||| | | |||||||| ||| Sbjct 17362570 ATCTTCCCCATAAAAGTTTTCATGGAAATCTGCATCTTG 17362608 >seq602 Length=3264241 Score = 100 bits (110), Expect = 7e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 104366 GATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCA 104425 || || || ||||| || ||||||| | || || ||||| | ||| | |||||| Sbjct 2398618 GACTCCTTTTGAATGTTGTAGTCAGTCAAAGGATGTCCATCTTCAA-TTGCCTGCCAGCA 2398560 Query 104426 AAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTG-CTTTTAC 104484 | || || ||||| ||| ||||||| ||| |||| |||||||||||| | | |||| || Sbjct 2398559 AGGATCAGTCTCTGCTGAACAGGAGGAATTTCTTCCTTATCCTGAATCCTGGCCTTTAAC 2398500 Query 104485 ATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTT 104544 |||| ||| ||||| ||||| ||||| || || || ||||| | |||| |||| Sbjct 2398499 ATTTCCTATTGTATCCGAGGGTTCCACCTCGAGAGTGATGGTCTTCACCCTAAGAGTTTC 2398440 Query 104545 TACAAATATCTGCATTTTG 104563 || | |||| ||| ||| Sbjct 2398439 CACGGAAATCTACATCTTG 2398421 >seq890 Length=2318022 Score = 96.9 bits (106), Expect = 8e-15 Identities = 151/212 (71%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 104360 AATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTT 104419 || || ||||||||||| | ||| ||| | || ||||| | || || || || ||||| Sbjct 119636 AAGGTGGATTCTTTCTGGAGATTGTAGCCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTG 119577 Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || ||||||||||| | ||| || | ||| || || || || || || || | ||||| | Sbjct 119576 CCCGCAAAAATTAGACGCTGCTGGTGAGGTGGGATGCCCTCCTTGTCTTGGA-CTTTGGT 119518 Query 104480 TTT-ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAG 104538 ||| ||||| || ||| || | || | ||| || || ||||| ||||| | || Sbjct 119517 TTTGACATTCTCAGTGGTGTCACCGGGCTTGACCGTGAGGGTGATAGTTTTACCCATCAG 119458 Query 104539 TGTTTTTACAAATATCTGCAT-TTTGTGTACA 104569 | || ||||| |||||||| | ||||| || Sbjct 119457 AGGCTTCACAAAGATCTGCATCTCTGTGTCCA 119426 >seq1316 Length=11094556 Score = 95.1 bits (104), Expect = 3e-14 Identities = 117/158 (74%), Gaps = 4/158 (3%) Strand=Plus/Plus Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| ||||| || |||||||| || || |||| ||| ||||| |||||||| Sbjct 7971079 CCATCTTCCAGTTGCTT-CCAGCAAAGATCAGTCTCTAATGACCAGGA---ATTCCTTCC 7971134 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 | |||||||||||| || || ||||||||| |||| ||||| |||| || || Sbjct 7971135 TGATCCTGAATCTTGGCCTTCACATTTTCTGTTGTATTTGAGGGTTCAGCCTCAAGAGTG 7971194 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || |||| | |||| ||||| || || |||||||| Sbjct 7971195 ATGATCTTCTCCATAAGGGTTTTCACGAAAATCTGCAT 7971232 >seq1344 Length=6361600 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 269492 GTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTC 269551 || |||||||| ||| |||||||||||||| ||| | ||||| ||| |||| ||||| Sbjct 6044798 GTAGAAAATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGGAAGACTAACTTCTTT 6044857 Query 269552 GAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTCTACTAAAGAAGAAAATATT 269611 |||||| | ||| | | ||||||| ||||| || ||||| | | | ||| ||| | Sbjct 6044858 GAGAAGAGAGTAGGCGAGTATCAGAGGATGGGAGTGATGTCAAGTCCAACAGAGAATTCT 6044917 Query 269612 TTCACTACAGATGCAGAATTCTAA 269635 || || ||||| || |||||| Sbjct 6044918 TTTACCTTGGATGCTGACTTCTAA 6044941 >seq747 Length=14734251 Score = 89.7 bits (98), Expect = 1e-12 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553 |||||||| | | | |||||||| | || || | || || | || || ||||| | Sbjct 10993016 TGGTGGTACTTTGTATCTAAAGGGGTTGAGTATTTGGACACCGTATTTTTTATCCTGAGG 10992957 Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTACTTTG 78613 |||||| || ||| | ||| || |||||||||||||| | ||| |||||||| || Sbjct 10992956 AAGAAAAACAACCAAGTCTCTTTCCTTCATGTATATCATCACTGTACAATGTTTACACTG 10992897 Query 78614 GGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 | ||||| || ||||| ||| |||| || ||||||| Sbjct 10992896 TGGTGGATTGGAATTAAGTGGGTCGCCGGGGGACAAG 10992860 >seq424 Length=11562000 Score = 89.7 bits (98), Expect = 1e-12 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || | || || || |||||||| ||||| ||||| || | ||| ||||| Sbjct 7322008 AAGGACCAGGTTCAAGGTGGACTCTTTCTGGATATTGTAGTCTGAGAAAGTGTGGCCGTC 7321949 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || ||||| || || |||| || | | |||| ||| | || || || || || || Sbjct 7321948 CTCCAGCTGTTTGCCCACACAAATCAGACGCCGTTGGTCAAGCGGGATGCCCTCCTTGTC 7321889 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || || || ||||| || || || | |||||| | | || || || || || || || Sbjct 7321888 TTGGATTTTGGCTTTGACCTTCTCCATGGTATCATTGGTCTCAACGTCAAGGGTGATGGT 7321829 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || | || || |||||||||||||| Sbjct 7321828 CTTGCCCATCCGTCTTC--ACAAATATCTGCAT 7321798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151376581360132