Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq1085 129 6e-25 >seq1085 Length=18888332 Score = 129 bits (142), Expect = 6e-25 Identities = 112/139 (81%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199 |||| |||||||| || || || |||| || ||||||||||||||| ||||||| || | Sbjct 2186643 AGGGTTACCTGGGTTGCCAAGCGTTGTCCGAGATGATCCAGTTTTACTTGGAGGAGGTGA 2186584 Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259 |||| |||||||| || ||||||| || |||| ||||||||||||| ||||| || | Sbjct 2186583 TGCCCCAGGCTGAGAACGAGGACCCAGACATCAAACAGCACGTGAACTCCCTGGGAGAAA 2186524 Query 10260 ATCTAAAGACCCTAAGGCT 10278 | || |||||||| |||| Sbjct 2186523 AGCTGAAGACCCTCCGGCT 2186505 Score = 95.1 bits (104), Expect = 1e-14 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418 |||| || || ||||| ||||||||||||||| |||| |||||||| || || ||||| | Sbjct 2184336 AGCTCCAAGAGAAAGGTGTCTACAAAGCCATGGGTGAGTTTGACATCTTCATCAACTACA 2184277 Query 10419 TAGAAGCATACATGACCATGAAAAT 10443 ||||||| |||||||| ||||| || Sbjct 2184276 TAGAAGCTTACATGACAATGAAGAT 2184252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547369080327040