Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09-
06] 1,479 sequences; 2,391,082,183 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq1153 123 2e-23
seq566 98.7 9e-16
seq515 91.5 1e-13
>seq1153
Length=1501042
Score = 123 bits (136), Expect = 2e-23
Identities = 169/236 (72%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 94774 TTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATA 94833
||| || || || ||||| |||| |||| ||| | ||| || ||||| || | ||| ||
Sbjct 1169604 TTAGACACCCCCCCTCAAGCGCAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTA 1169545
Query 94834 ATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATC 94893
|| || ||| ||| ||||||||||| ||| ||||||| || || ||||| ||
Sbjct 1169544 GTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTC 1169485
Query 94894 TGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG 94953
|| || || || || ||||| | || || ||||||||| ||| |||||| | |
Sbjct 1169484 AGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGG 1169425
Query 94954 GTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
|| || || | |||||||| || || || || || ||||| |||||||||||||
Sbjct 1169424 CTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGC 1169369
Score = 114 bits (126), Expect = 1e-20
Identities = 152/211 (72%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858
|||| ||||| ||| || ||||| || | ||| || || || ||| ||| |||
Sbjct 1169351 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 1169292
Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918
|||||||| ||| ||||||| || || ||||| || || || || || || ||||| |
Sbjct 1169291 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 1169232
Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978
|| || ||||||||| ||| |||||| | | || || || | |||||||| ||
Sbjct 1169231 ATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 1169172
Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
|| || || || ||||| |||||||||||||
Sbjct 1169171 CCCGTCAGGGTCTTCACGAAGATCTGCATGC 1169141
Score = 114 bits (126), Expect = 1e-20
Identities = 167/236 (71%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 94774 TTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATA 94833
||| || || || ||||| |||| |||| ||| | ||| || ||||| || | ||| ||
Sbjct 1171033 TTAGACACCCCCCCTCAAGCGCAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTA 1170974
Query 94834 ATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATC 94893
|| || ||| ||| ||||||||||| ||| ||||||| || || ||||| ||
Sbjct 1170973 GTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTC 1170914
Query 94894 TGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG 94953
|| || || || || ||||| | || || |||||||| ||| |||||| | |
Sbjct 1170913 AGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGG 1170854
Query 94954 GTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
|| || || | |||||||| || || || | || ||||| |||||||||||||
Sbjct 1170853 CTCCACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCATGC 1170798
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858
|||| ||||| ||| || ||||| || | ||| || || || ||| ||| |||
Sbjct 1169123 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 1169064
Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918
|||||||| ||| ||||||| || || ||||| || || || || || ||||| || |
Sbjct 1169063 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCTTTTTCCTGG 1169004
Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978
|| || | ||||| | | |||||| | | || || || | |||||||| ||
Sbjct 1169003 ATCTTCCCTTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 1168944
Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATG 95008
|| || | || ||||| ||||||||||||
Sbjct 1168943 CCCGTCAAGGTCTTCACGAAGATCTGCATG 1168914
>seq566
Length=2972453
Score = 98.7 bits (108), Expect = 9e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| || |||| || | |||| || | ||| || || || || | ||| |||||
Sbjct 801013 CCACCCCTCAGACGAAGAACCAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAA 801072
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| |||| | |||||||||||| || || ||||||| | || ||||| || || ||
Sbjct 801073 AGAGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 801132
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| |||||||| || | || || ||||| ||| ||| |||||| | | || ||
Sbjct 801133 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACC 801192
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| | |||||||| || || || || || ||||| |||||||||||
Sbjct 801193 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 801239
Score = 98.7 bits (108), Expect = 9e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| || |||| |||| |||| ||||| || || || || || | ||| |||||
Sbjct 801241 CCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 801300
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| |||| | |||||||||||| || || ||||||| | || ||||| ||||| ||
Sbjct 801301 AGAGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGG 801360
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| || || || || | || || ||||| ||| ||| |||||| | | || ||
Sbjct 801361 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACC 801420
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| | |||||||| || || || || || ||||| ||||| |||||
Sbjct 801421 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCAT 801467
>seq515
Length=2727018
Score = 91.5 bits (100), Expect = 1e-13
Identities = 203/302 (67%), Gaps = 2/302 (1%)
Strand=Plus/Plus
Query 43606 CCGGATCTTCTTCCAGTTCAGGGTAAGATATCTTTTCACAAATGAGCTGGGCGATTCTGT 43665
|| || |||| || | ||| || | | | ||| |||| |||||||||| || |||| |
Sbjct 2713143 CCTGAACTTCCTCTATTTCTGGATCAAAAATCCGTTCATAAATGAGCTGTGCAATTCGAT 2713202
Query 43666 CTCCCTGCAGCACGTAAAAAGTGTGCTTATCGTGGTTGAATAGCACCACGCCCACGTTTC 43725
| |||| || | ||| | | || | || |||||||| || ||||| ||||
Sbjct 2713203 CACCCTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAATAGCACAACACCCACATTTC 2713262
Query 43726 CCCTATAGTCTTCGTCTATTACGCCCGCGCCTACGTCTATTCCGTGACGTACTGCCAAGC 43785
| ||||| ||||| ||||| ||||| || | ||| ||||| ||| | |||||||
Sbjct 2713263 CTCTATAATCTTCATCTATGACGCCAGCTCTTACATCTATGAAGTGTTTCGCAGCCAAGC 2713322
Query 43786 CTGATCTGGCGGCCACCCTGCCATAATGTCCGTGAGGCACGGCTACCCGTATGTCCGTTT 43845
| || | || || || || ||||| || || | |||| | | ||||||||||
Sbjct 2713323 CAGAACGGGGAGCTACTCTTCCATAGCACCCAGAAGAAAGAGCTATCTGAATGTCCGTTT 2713382
Query 43846 TTACGAGG-CTGTAGCCTTTGGGTTCTATGGCCAAATCTTGGGCGCTGTACAGATCGTAC 43904
| || ||| || | || | || | || | |||| | ||| ||||||||||||||
Sbjct 2713383 TCACAAGGGCTTTTTCCATAGG-TGGTACTGTATAATCATAGGCACTGTACAGATCGTAG 2713441
Query 43905 CC 43906
||
Sbjct 2713442 CC 2713443
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448282912216440
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