Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09-
06] 1,479 sequences; 2,391,082,183 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq694 125 1e-24
seq273 118 2e-22
>seq694
Length=2958536
Score = 125 bits (138), Expect = 1e-24
Identities = 188/267 (70%), Gaps = 0/267 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||||| || |||| | | | |||| ||||||||||| ||||| ||||| || ||
Sbjct 171535 GCCAAGCGCCACCGCAAAGTTTTGAGAGACAACATCCAAGGGATCACGAAGCCGGCAATT 171594
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| || || || || ||||| ||||||||||| |||| || | |||| || ||||
Sbjct 171595 CGGCGCCTTGCCCGGCGTGGAGGAGTCAAGCGGATCTCCGGTCTCATCTACGAGGAGACC 171654
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | || ||||| | ||||| | | ||| || | ||||| || ||| || |||
Sbjct 171655 CGGGGCGTGCTGAAGGTTTTCCTGGAAAACGTCATTCGGGATGCAGTCACCTACACTGAG 171714
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||| || || ||||| || || | ||||| | || ||||| |||| || || ||
Sbjct 171715 CACGCCAAGCGCAAGACGGTGACGGCTATGGACGTAGTGTATGCCCTGAAGCGACAGGGA 171774
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699
|| | | |||||||| ||| | |||
Sbjct 171775 CGCACCCTGTATGGTTTCGGAGGCTAA 171801
>seq273
Length=2693121
Score = 118 bits (130), Expect = 2e-22
Identities = 172/243 (71%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 1441057 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 1441116
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || || || || |||||||| |||| || | |||| || ||||
Sbjct 1441117 CCGGCGGCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 1441176
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| | ||||| ||| ||| |||| || || || ||| || ||
Sbjct 1441177 CCGCGGGGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGGA 1441236
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| ||||| ||||||| | || || || | || || || ||
Sbjct 1441237 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGGG 1441296
Query 16672 CCG 16674
|||
Sbjct 1441297 CCG 1441299
Score = 118 bits (130), Expect = 2e-22
Identities = 172/243 (71%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 1606539 CGCGAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 1606598
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || || || || || ||||| |||| || | |||| || ||||
Sbjct 1606599 CCGGCGGCTGGCCCGGCGCGGCGGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 1606658
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| | ||||| ||| ||| |||| || || || ||| || ||
Sbjct 1606659 CCGCGGGGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGGA 1606718
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| ||||| ||||||| | || ||||| | || || || ||
Sbjct 1606719 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTATGCGCTCAAGCGCCAGGG 1606778
Query 16672 CCG 16674
|||
Sbjct 1606779 CCG 1606781
Score = 105 bits (116), Expect = 1e-18
Identities = 156/221 (71%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || || |||||||| || ||||||||||| || ||||| || ||||| || || ||
Sbjct 1507094 CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCATCCGGCGGCTGGCCCGGCGCGGC 1507153
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| | ||||| |||| || | |||| || |||| || | || | ||| | |||
Sbjct 1507154 GGCGGGAAGCGCATCTCCGGCCTCATCTACGAGGAGACCCGCGGGGTGCTCAAGGTGTTC 1507213
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
|| ||| ||| |||| || || || ||| || |||||||| || || ||||| |||
Sbjct 1507214 CTGGAGAACGTGATCCGGGACGCCGTCACCTACACGGAGCACGCCAAGCGCAAGACGGTC 1507273
Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674
|| ||||||| | || || || | || || || |||||
Sbjct 1507274 ACGGCCATGGACGTGGTGTACGCGCTCAAGCGACAGGGCCG 1507314
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79073847739947
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |