Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq694 125 1e-24 seq273 118 2e-22 >seq694 Length=2958536 Score = 125 bits (138), Expect = 1e-24 Identities = 188/267 (70%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| | | | |||| ||||||||||| ||||| ||||| || || Sbjct 171535 GCCAAGCGCCACCGCAAAGTTTTGAGAGACAACATCCAAGGGATCACGAAGCCGGCAATT 171594 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || || || || ||||| ||||||||||| |||| || | |||| || |||| Sbjct 171595 CGGCGCCTTGCCCGGCGTGGAGGAGTCAAGCGGATCTCCGGTCTCATCTACGAGGAGACC 171654 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| | ||||| | | ||| || | ||||| || ||| || ||| Sbjct 171655 CGGGGCGTGCTGAAGGTTTTCCTGGAAAACGTCATTCGGGATGCAGTCACCTACACTGAG 171714 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| || || | ||||| | || ||||| |||| || || || Sbjct 171715 CACGCCAAGCGCAAGACGGTGACGGCTATGGACGTAGTGTATGCCCTGAAGCGACAGGGA 171774 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | |||||||| ||| | ||| Sbjct 171775 CGCACCCTGTATGGTTTCGGAGGCTAA 171801 >seq273 Length=2693121 Score = 118 bits (130), Expect = 2e-22 Identities = 172/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 1441057 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 1441116 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 1441117 CCGGCGGCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 1441176 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 1441177 CCGCGGGGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGGA 1441236 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | || || || | || || || || Sbjct 1441237 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGGG 1441296 Query 16672 CCG 16674 ||| Sbjct 1441297 CCG 1441299 Score = 118 bits (130), Expect = 2e-22 Identities = 172/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 1606539 CGCGAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 1606598 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || || ||||| |||| || | |||| || |||| Sbjct 1606599 CCGGCGGCTGGCCCGGCGCGGCGGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 1606658 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 1606659 CCGCGGGGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGGA 1606718 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | || ||||| | || || || || Sbjct 1606719 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTATGCGCTCAAGCGCCAGGG 1606778 Query 16672 CCG 16674 ||| Sbjct 1606779 CCG 1606781 Score = 105 bits (116), Expect = 1e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| || ||||| || || || Sbjct 1507094 CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCATCCGGCGGCTGGCCCGGCGCGGC 1507153 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || | ||||| |||| || | |||| || |||| || | || | ||| | ||| Sbjct 1507154 GGCGGGAAGCGCATCTCCGGCCTCATCTACGAGGAGACCCGCGGGGTGCTCAAGGTGTTC 1507213 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || || ||| || |||||||| || || ||||| ||| Sbjct 1507214 CTGGAGAACGTGATCCGGGACGCCGTCACCTACACGGAGCACGCCAAGCGCAAGACGGTC 1507273 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || ||||||| | || || || | || || || ||||| Sbjct 1507274 ACGGCCATGGACGTGGTGTACGCGCTCAAGCGACAGGGCCG 1507314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073847739947