Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1344 147 3e-30 seq722 131 2e-25 seq485 87.8 2e-12 seq515 86.0 8e-12 >seq1344 Length=6361600 Score = 147 bits (162), Expect = 3e-30 Identities = 114/136 (84%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| ||||| ||||| |||||||||||||| || ||||| ||||| || || | Sbjct 6043431 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCT 6043372 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| ||||| || ||||| || |||||||||||||||||||| ||||||||||||| Sbjct 6043371 TGAGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 6043312 Query 33446 CAATAAGTCTCTCTCC 33461 | | || | |||||| Sbjct 6043311 CCACAACCCGCTCTCC 6043296 Score = 98.7 bits (108), Expect = 1e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623 |||||||| ||||| || || | ||||||||||| || ||||| |||||||| ||||| Sbjct 6041436 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATCTCAGAATGGATGTTTTCCATGGC 6041377 Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683 || || || ||||||||||| | || || |||||||| |||||| | ||| || || Sbjct 6041376 AATTTGGAAGCCGTAGAAACAGCGGGCTTCAGTAATCTGAACTTCTTGGCTAAACCGCTC 6041317 Query 33684 CGCC 33687 | || Sbjct 6041316 CACC 6041313 >seq722 Length=1584642 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||||||||| ||||| ||||| ||||| || || || |||||||| ||||| | Sbjct 1256636 ACCTGAAATTCTCCCGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCGATG 1256695 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 1256696 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 1256755 Query 62457 CTATTTCTAAGACCGTA 62473 || ||||| | ||| || Sbjct 1256756 CTGTTTCTTATACCATA 1256772 Score = 100 bits (110), Expect = 4e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271 || |||||||||||| |||||||| ||||||||||| || | || || ||||||| | Sbjct 1266459 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCTCTGGCACG 1266518 Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331 ||||| || |||||||| ||||| || | ||| || ||| | | ||| || ||||||| Sbjct 1266519 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCA 1266578 Query 63332 CGGTTCCA 63339 || |||| Sbjct 1266579 AGGCTCCA 1266586 >seq485 Length=11789088 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 33801 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATA 33860 ||| ||||| ||||||| || ||||||| ||||||||||||||| ||||| |||||| Sbjct 157411 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATGTCAGG 157470 Query 33861 ATATTGGATTGGGAAAATAACAAATC 33886 || |||||||| || || ||||||| Sbjct 157471 GTACTGGATTGGAAAGATGACAAATC 157496 >seq515 Length=2727018 Score = 86.0 bits (94), Expect = 8e-12 Identities = 143/206 (69%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 31096 TGTACTTCTTCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCT 31155 || ||||| || | |||||||| | | || |||| ||| || ||||| || |||| ||| Sbjct 2713145 TGAACTTCCTCTATTTCTGGATCAAAAATCCGTTCATAAATGAGCTGTGCAATTCGATCA 2713204 Query 31156 CCAGTATTTACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCC 31215 || | || || | |||| | ||| ||| ||||| || | || || | ||||| Sbjct 2713205 CCCTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAATAGCACAACACCCACATTTCCT 2713264 Query 31216 CTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACCA 31272 ||||||||||| ||||| || || ||| || ||| || | ||| | || ||| Sbjct 2713265 CTATAATCTTCATCTATGACGCCAGCTCTTACATCTATGAAGTGTTTCGCAGCCAAGCCA 2713324 Query 31273 GACCTAGGAGCTATTCTACCATAGCA 31298 || | ||||||| ||| |||||||| Sbjct 2713325 GAACGGGGAGCTACTCTTCCATAGCA 2713350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622935683263640