Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1344 132 6e-26 seq722 131 2e-25 seq485 91.5 2e-13 seq515 82.4 1e-10 >seq1344 Length=6361600 Score = 132 bits (146), Expect = 6e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| ||||| | ||| |||||||||||||| || ||||| ||||| || || | Sbjct 6043431 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCT 6043372 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| ||||| ||||| || || ||||||||||| |||||||| ||||| ||||||| Sbjct 6043371 TGAGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 6043312 Query 32803 CAATAAGTCTCTCTCC 32818 | | || | |||||| Sbjct 6043311 CCACAACCCGCTCTCC 6043296 Score = 96.9 bits (106), Expect = 4e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 |||||||| || || ||||| | ||||||||||| || ||||| |||||||| ||||| Sbjct 6041436 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATCTCAGAATGGATGTTTTCCATGGC 6041377 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCT 33026 ||||| || |||||||| || | || || |||||||| |||||| Sbjct 6041376 AATTTGGAAGCCGTAGAAACAGCGGGCTTCAGTAATCTGAACTTCT 6041331 >seq722 Length=1584642 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || ||||||||||| ||||| ||||| ||||| || || || |||||||| ||||| | Sbjct 1256636 ACCTGAAATTCTCCCGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCGATG 1256695 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 1256696 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 1256755 Query 62312 CTATTTCTAAGACCGTA 62328 || ||||| | ||| || Sbjct 1256756 CTGTTTCTTATACCATA 1256772 Score = 100 bits (110), Expect = 4e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126 || |||||||||||| |||||||| ||||||||||| || | || || ||||||| | Sbjct 1266459 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCTCTGGCACG 1266518 Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186 ||||| || |||||||| ||||| || | ||| || ||| | | ||| || ||||||| Sbjct 1266519 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCA 1266578 Query 63187 CGGTTCCA 63194 || |||| Sbjct 1266579 AGGCTCCA 1266586 Score = 93.3 bits (102), Expect = 5e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| || | ||| |||||||||||||| | || || || || || || || || || | Sbjct 1278590 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTGGAGACCGCAATCCTTGCTGCCAGGA 1278649 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 ||||||| || || || | ||||| | || || ||| |||| || |||| ||| || | Sbjct 1278650 TGGCATAGTCAGGGTGCTTGGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTATCTA 1278709 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 ||| || || || || ||| | |||| || ||||| || ||||| Sbjct 1278710 GTTCCACAGTGGTGACCCCACTGTATAAGCCCTGGATTACTTTCAT 1278755 >seq485 Length=11789088 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 33159 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 33218 || ||||| ||||||| || ||||||| ||||||||||||||| ||||| |||||| | Sbjct 157412 ACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATGTCAGGG 157471 Query 33219 TATTGAATTGGAAAAATAACAAATC 33243 || || |||||||| || ||||||| Sbjct 157472 TACTGGATTGGAAAGATGACAAATC 157496 >seq515 Length=2727018 Score = 82.4 bits (90), Expect = 1e-10 Identities = 142/206 (69%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 30453 TGTACTTCTTTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCC 30512 || ||||| | | |||||||| | | || |||| ||| || ||||| || |||| ||| Sbjct 2713145 TGAACTTCCTCTATTTCTGGATCAAAAATCCGTTCATAAATGAGCTGTGCAATTCGATCA 2713204 Query 30513 CCCGTATTTACATTGAATGTACATTTTCCATTATTAATAAGAATGACTCCTATATTTCCC 30572 ||| | || || | || | ||| ||| ||||| || | || || | |||||| Sbjct 2713205 CCCTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAATAGCACAACACCCACATTTCCT 2713264 Query 30573 CTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACCA 30629 ||||||||||| ||||| || || ||| || ||| || | ||| | || ||| Sbjct 2713265 CTATAATCTTCATCTATGACGCCAGCTCTTACATCTATGAAGTGTTTCGCAGCCAAGCCA 2713324 Query 30630 GACCTAGGAGCTATTCTACCATAGCA 30655 || | ||||||| ||| |||||||| Sbjct 2713325 GAACGGGGAGCTACTCTTCCATAGCA 2713350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633620285728400