Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq566 95.1 1e-14 seq1477 86.0 5e-12 >seq566 Length=2972453 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| | ||| | || || ||||| || ||||||||||| | ||| || ||| || Sbjct 801030 AACCAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCCTC 801089 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 || || || || || ||||||| | ||| ||||| || || ||||||||||| || Sbjct 801090 CAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTG 801149 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||||| || | | ||| | |||||| ||| || || |||| ||| | || || Sbjct 801150 GATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTT 801209 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||||||| || || || || |||||||| Sbjct 801210 GCCGGTCAGGGTCTTCACGAAGATCTGCAT 801239 >seq1477 Length=8748460 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/228 (69%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| |||| |||||||| | | ||| | || || || || ||||||||||| || Sbjct 7843772 ACCACCACAAAGTCTCAACA--AGATGAA--GTGGACTCCTTCTGAATGTTGTAGTCAGA 7843827 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| ||||| || ||||| |||| | || ||| || | ||||| Sbjct 7843828 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACTCTGCTGATAAGGAGG 7843887 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| |||| || || |||||| ||| | ||| | || || | || |||||| Sbjct 7843888 AATTTCTTCCTTATCCCGAATCTTGGCTTTCATACTTTCTATTGTATCCGAGGGTTCGAC 7843947 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | | || || || || || ||||| |||||| | ||||| Sbjct 7843948 CTCAACACTGATGGTCTTTCCTGTAAGGGTTTTCACAAAATTTTGCAT 7843995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420126826946148