Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq566 134 3e-26 seq424 95.1 3e-14 >seq566 Length=2972453 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | || | ||| || ||||| | ||| ||||| ||||| || || || | Sbjct 801013 CCACCCCTCAGACGAAGAACCAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAA 801072 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || ||||| ||||| || | ||| || | ||| Sbjct 801073 AGAGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 801132 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||||||||||||||| || || ||||||||||| || | || || | || || Sbjct 801133 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACC 801192 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| |||||||| ||||| ||||| |||||||| Sbjct 801193 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 801239 Score = 114 bits (126), Expect = 3e-20 Identities = 145/198 (73%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | || ||||| || || || | || || ||||| ||| Sbjct 801277 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAAG 801336 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || || | ||| || |||||| || || || ||||||||||| || || |||||| Sbjct 801337 ATGAGCCTCTGCTGG---TCTGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACG 801393 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| || | || || | || || || || ||||| ||||| |||||||| ||||| Sbjct 801394 TTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTC 801453 Query 288460 ACGAATATCTGCATTATG 288477 ||||| || |||||| || Sbjct 801454 ACGAAGATTTGCATTTTG 801471 >seq424 Length=11562000 Score = 95.1 bits (104), Expect = 3e-14 Identities = 136/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| |||||||| ||||| | || ||| | ||||| || | ||||| || | | Sbjct 7321986 TCTTTCTGGATATTGTAGTCTGAGAAAGTGTGGCCGTCCTCCAGCTGTTTGCCCACACAA 7321927 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||| |||| | ||||| || || || || |||||||| ||||| || || Sbjct 7321926 ATCAGACGCCGTTGGTCAAGCGGGATGCCCTCCTTGTCTTGGATTTTGGCTTTGACCTTC 7321867 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| | | || || || || ||||| ||||| || || | |||| || Sbjct 7321866 TCCATGGTATCATTGGTCTCAACGTCAAGGGTGATGGTCTTGCCCATCCG--TCTTCACA 7321809 Query 288463 AATATCTGCAT 288473 ||||||||||| Sbjct 7321808 AATATCTGCAT 7321798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179632045917762