Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq566 123 2e-23 seq738 87.8 2e-12 seq1477 82.4 8e-11 >seq566 Length=2972453 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||| | || || ||||| || ||||||||||| | | ||||| | || Sbjct 801027 AAGAACCAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATC 801086 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || ||||||||||| ||| | ||||||| ||||||||| || || || |||||||| || Sbjct 801087 CTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATC 801146 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| || || | || |||| || ||||| || | || | ||| Sbjct 801147 CTGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 801206 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||||||||| || || ||||| || ||||| Sbjct 801207 CTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 801239 Score = 122 bits (134), Expect = 9e-23 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| ||||| || ||||||||||| | | ||||| | || || ||||||||||| Sbjct 801271 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCCTCCAGCTGCTTGCCT 801330 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| ||||||||| || || || || || || || || || || ||| Sbjct 801331 GCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTC 801390 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | || |||| || ||||| || | || | |||||||||||||| || Sbjct 801391 ACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 801450 Query 64427 TTTACGAAAATTTGCATTTT 64446 || ||||| ||||||||||| Sbjct 801451 TTCACGAAGATTTGCATTTT 801470 >seq738 Length=7307337 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/201 (71%), Gaps = 5/201 (2%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTT-GCC 64305 || ||| |||| || || ||||||| | | ||||| ||||| ||| |||| ||| Sbjct 4320456 GTTGATCCTTTCTGGGTGCTGTAATCAGAAAGAGTGCGGCTATCTTCCAGCAGCTTTGCC 4320397 Query 64306 GGCATAAA--TGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 ||| ||| |||||| ||||||||| || || |||||||| ||||| || || || Sbjct 4320396 TGCAAAAAGGTGAGCCTCTGCTGGTCAGGGCAGATCCCTTCTTTATCTTGGATCTTA-GC 4320338 Query 64364 TTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAA 64422 ||| ||| ||| | || ||| || ||||| || | ||| ||||||||||| |||| Sbjct 4320337 TTTCACATTCTCAATGGTGTCAGTGGGCTCCACCTCCAGAGTGACGGTCTTGCCAGTCAG 4320278 Query 64423 AGTTTTTACGAAAATTTGCAT 64443 || || | || || ||||| Sbjct 4320277 GGTCTTCGCAAACATCTGCAT 4320257 >seq1477 Length=8748460 Score = 82.4 bits (90), Expect = 8e-11 Identities = 148/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 || ||||||| || || || || ||||||||||| || | | || || | ||||| Sbjct 7843789 ACAAGATGAA--GTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCC 7843846 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 || |||||||| ||| | || | | |||||| | ||||||||| |||| || || | Sbjct 7843847 AGTTGCTTGCCAGCAAAGATCAAACTCTGCTGATAAGGAGGAATTTCTTCCTTATCCCG- 7843905 Query 64355 ATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 | | || ||||| | | || | |||||| || || || || ||| | | |||||| Sbjct 7843906 AATCTTGGCTTTCATACTTTCTATTGTATCCGAGGGTTCGACCTCAACACTGATGGTCTT 7843965 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || || | ||||| || ||| ||||||| || Sbjct 7843966 TCCTGTAAGGGTTTTCACAAAATTTTGCATCTT 7843998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499635562816760