Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09-
06] 1,479 sequences; 2,391,082,183 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq566 123 2e-23
seq738 87.8 2e-12
seq1477 82.4 8e-11
>seq566
Length=2972453
Score = 123 bits (136), Expect = 2e-23
Identities = 155/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
||| || ||||| | || || ||||| || ||||||||||| | | ||||| | ||
Sbjct 801027 AAGAACCAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATC 801086
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
|| ||||||||||| ||| | ||||||| ||||||||| || || || |||||||| ||
Sbjct 801087 CTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATC 801146
Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
|| || || ||| || || | || |||| || ||||| || | || | |||
Sbjct 801147 CTGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 801206
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||||||||||| || || ||||| || |||||
Sbjct 801207 CTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 801239
Score = 122 bits (134), Expect = 9e-23
Identities = 147/200 (74%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
||||| ||||| || ||||||||||| | | ||||| | || || |||||||||||
Sbjct 801271 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCCTCCAGCTGCTTGCCT 801330
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
||| | ||||||| ||||||||| || || || || || || || || || || |||
Sbjct 801331 GCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTC 801390
Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426
|| || | || |||| || ||||| || | || | |||||||||||||| ||
Sbjct 801391 ACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 801450
Query 64427 TTTACGAAAATTTGCATTTT 64446
|| ||||| |||||||||||
Sbjct 801451 TTCACGAAGATTTGCATTTT 801470
>seq738
Length=7307337
Score = 87.8 bits (96), Expect = 2e-12
Identities = 143/201 (71%), Gaps = 5/201 (2%)
Strand=Plus/Minus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTT-GCC 64305
|| ||| |||| || || ||||||| | | ||||| ||||| ||| |||| |||
Sbjct 4320456 GTTGATCCTTTCTGGGTGCTGTAATCAGAAAGAGTGCGGCTATCTTCCAGCAGCTTTGCC 4320397
Query 64306 GGCATAAA--TGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363
||| ||| |||||| ||||||||| || || |||||||| ||||| || || ||
Sbjct 4320396 TGCAAAAAGGTGAGCCTCTGCTGGTCAGGGCAGATCCCTTCTTTATCTTGGATCTTA-GC 4320338
Query 64364 TTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAA 64422
||| ||| ||| | || ||| || ||||| || | ||| ||||||||||| ||||
Sbjct 4320337 TTTCACATTCTCAATGGTGTCAGTGGGCTCCACCTCCAGAGTGACGGTCTTGCCAGTCAG 4320278
Query 64423 AGTTTTTACGAAAATTTGCAT 64443
|| || | || || |||||
Sbjct 4320277 GGTCTTCGCAAACATCTGCAT 4320257
>seq1477
Length=8748460
Score = 82.4 bits (90), Expect = 8e-11
Identities = 148/213 (69%), Gaps = 4/213 (2%)
Strand=Plus/Plus
Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294
|| ||||||| || || || || ||||||||||| || | | || || | |||||
Sbjct 7843789 ACAAGATGAA--GTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCC 7843846
Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354
|| |||||||| ||| | || | | |||||| | ||||||||| |||| || || |
Sbjct 7843847 AGTTGCTTGCCAGCAAAGATCAAACTCTGCTGATAAGGAGGAATTTCTTCCTTATCCCG- 7843905
Query 64355 ATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413
| | || ||||| | | || | |||||| || || || || ||| | | ||||||
Sbjct 7843906 AATCTTGGCTTTCATACTTTCTATTGTATCCGAGGGTTCGACCTCAACACTGATGGTCTT 7843965
Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
|| || | ||||| || ||| ||||||| ||
Sbjct 7843966 TCCTGTAAGGGTTTTCACAAAATTTTGCATCTT 7843998
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499635562816760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |