Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09-
06] 1,479 sequences; 2,391,082,183 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq1085 156 6e-33
seq969 91.5 2e-13
>seq1085
Length=18888332
Score = 156 bits (172), Expect = 6e-33
Identities = 215/301 (71%), Gaps = 0/301 (0%)
Strand=Plus/Plus
Query 8875 AACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGT 8934
||| | ||| || | || ||||| |||||||| || || ||||| |||||||| |
Sbjct 16024877 AACACTGAATGCAGTAAAAGGACAGCCCTTCACGTTATTGCAGATGAGAGACTGAATCGA 16024936
Query 8935 TGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGC 8994
|| || || | ||| | |||||||| || || || || ||||| || |||||||| |
Sbjct 16024937 GGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTAGTC 16024996
Query 8995 CGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGAT 9054
|| ||||| || || |||| |||||||||||||| || || || |||| || |
Sbjct 16024997 AGGAGAGCATATAGGATTACCCATAAGCCCTTTCAAGGAGAATGGTGCTCCCATTTCTAC 16025056
Query 9055 GATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAG 9114
||| ||||||| ||||||||| | || || || ||||| || | | | ||| || ||
Sbjct 16025057 CATGGTCTCACCAAAGATGGCATCAGGGCGAGGCTTTTCTACCAGAAGGGCAGGATACAG 16025116
Query 9115 TTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACC 9174
|| | || || | || ||||| || ||||| ||| | ||||| || |||||||| ||
Sbjct 16025117 CTCCATGGCATCAATATCACCATAAAGTGCTTCTAACCCCGCAGCCATTTCCTTCTCTCC 16025176
Query 9175 T 9175
|
Sbjct 16025177 T 16025177
Score = 156 bits (172), Expect = 6e-33
Identities = 169/224 (75%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798
|| || |||||| |||| ||| ||||||| || || || ||||| || ||||| || ||
Sbjct 16026630 GTCTGGAACAACCGCTCATCATCCCATTCTGGATGCTCCTGTTTAAGCACATCACACACT 16026689
Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858
||||||||||| | |||||| || |||||||||||||| | ||| ||||| | ||||||
Sbjct 16026690 CTGTTGTGTTCCCGCAGCCAAATTGTGGCGTACATCATCAGACCAGGCACCAGACCAAAG 16026749
Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918
|| || | ||||| ||||| ||||| | || || || | || | || | ||| |
Sbjct 16026750 ACCTCCTGGCCCACAGCAAACCGCAGGTGTTCAGGAACGTGAGGTGGGTAGATCATCTCG 16026809
Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962
||||| || |||||||| ||||| ||||||| || || || ||
Sbjct 16026810 ACCTGAGTATCTTTGACTGTGGGAGGATACACCTCCCCATCGAT 16026853
Score = 125 bits (138), Expect = 1e-23
Identities = 134/177 (76%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180
|||||||||||| |||| |||| | |||||||| ||||||||| ||| ||| | ||
Sbjct 16027713 TCTTACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 16027772
Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240
|||||| || || |||||||| | ||||| || ||||||| || ||||| ||||| ||
Sbjct 16027773 AAATTGATGGGTGAAGTGTTGGGCAAAAAATGCAAACATCATATTTGTGCCTTGGGGGTC 16027832
Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297
|| || || | || | | || || ||| |||||||||| | ||||||| || ||
Sbjct 16027833 AGGAATGAACTTTCTTCTTAGAAGAAATTTTTCCACAATCTCTTTTGAATCAGGAAG 16027889
Score = 113 bits (124), Expect = 7e-20
Identities = 115/150 (77%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446
||||||||||| || | || || ||||||||| || || || || |||| ||| |||
Sbjct 16028361 TCACCTTTCACACCCATGGGTGTTGGGCAGTCATCAGCCACAGGGGGAAGAGCTCTGGTA 16028420
Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506
|||||||| ||||| ||||| ||||||||||| || |||||||| || | |||||
Sbjct 16028421 TAATAGGAGAGATTGGAAAAGGCTTCCCAGCTTTTATAGCCATAGTCCACATTGTAAGTT 16028480
Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536
|| || || ||||||| | |||||||||
Sbjct 16028481 GGTGGGCTCTCAATCAAATGTGACCTGGCT 16028510
Score = 96.9 bits (106), Expect = 5e-15
Identities = 194/286 (68%), Gaps = 4/286 (1%)
Strand=Plus/Plus
Query 9436 CCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATG 9495
|| ||||| || || |||| ||||| || || |||| | || || | | | ||
Sbjct 16026043 CCAGCAATTTGCCTGCTGAATGATTCCACGAACTGGGTAAGCCCATGTTCCAGTAATATA 16026102
Query 9496 GAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCA 9555
|| |||||||| || || || | | || |||| | ||| |||| | || |||
Sbjct 16026103 GAGTTGTTGTAGACAAACTGCTGGAAATTGTACTCCTGGTCATCTATTTGCAAGGTGTCA 16026162
Query 9556 GGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTAC 9615
|||| || | ||||||| ||||||| || || ||||| || || || ||||| |||||
Sbjct 16026163 GGCAGAAGGGGATGCCAGTGGTAGAGTGTGTTAAACTCAGCAGCAATACGGTTTTGGTAT 16026222
Query 9616 TGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGC 9673
|| || | ||| ||| || | ||| |||||||| | || | |||||| || || |
Sbjct 16026223 TGGAATTGTTGGTT--GAAAAGCAGCTCTGGGTCAAACTTCAGTTTGAAGTGATAGCCAC 16026280
Query 9674 TGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719
| | || || ||||| | | || | ||| ||||||||||| ||
Sbjct 16026281 TCAAGTGTTGTACATAGTCTTCAATCACAATCTTAATGGTTTCTCC 16026326
>seq969
Length=21006342
Score = 91.5 bits (100), Expect = 2e-13
Identities = 153/219 (70%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 8963 TCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGC 9022
|| || || || ||||| || ||||| ||| | || || |||||| ||| | | |||
Sbjct 15512119 TCACCACCAAATGTGCTTGGCTTCCAATACTCTGGAGAACAGATGGGATTCCCTAGGAGG 15512060
Query 9023 CCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGA 9082
|| || | ||||| || ||||| | || || || ||||| || ||||||| | |||
Sbjct 15512059 CCCTTGAGAGAAAAAGGGGCCCCAATTTCTATCATACTCTCCCCAAAGATGGAATTTGGA 15512000
Query 9083 CGCGGTTTTTCGACGATGAAGCCA-GTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAG 9141
| || || | || | |||| | | ||| || | || |||| ||| ||||| ||
Sbjct 15511999 TGGCACTTCTCCA-GAAGCAGCCCCGGGAAGAACTCCAAGGCATCGATGTCTCCATACAG 15511941
Query 9142 GGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACAAG 9180
| ||||||||||| || ||||||||||| ||| ||||
Sbjct 15511940 CTCCTCCAACTCGGCTGCCATCTCCTTCTCTCCTGCAAG 15511902
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 723714620078600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |