Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq1085 156 6e-33 seq969 91.5 2e-13 >seq1085 Length=18888332 Score = 156 bits (172), Expect = 6e-33 Identities = 215/301 (71%), Gaps = 0/301 (0%) Strand=Plus/Plus Query 8875 AACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGT 8934 ||| | ||| || | || ||||| |||||||| || || ||||| |||||||| | Sbjct 16024877 AACACTGAATGCAGTAAAAGGACAGCCCTTCACGTTATTGCAGATGAGAGACTGAATCGA 16024936 Query 8935 TGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGC 8994 || || || | ||| | |||||||| || || || || ||||| || |||||||| | Sbjct 16024937 GGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTAGTC 16024996 Query 8995 CGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGAT 9054 || ||||| || || |||| |||||||||||||| || || || |||| || | Sbjct 16024997 AGGAGAGCATATAGGATTACCCATAAGCCCTTTCAAGGAGAATGGTGCTCCCATTTCTAC 16025056 Query 9055 GATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAG 9114 ||| ||||||| ||||||||| | || || || ||||| || | | | ||| || || Sbjct 16025057 CATGGTCTCACCAAAGATGGCATCAGGGCGAGGCTTTTCTACCAGAAGGGCAGGATACAG 16025116 Query 9115 TTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACC 9174 || | || || | || ||||| || ||||| ||| | ||||| || |||||||| || Sbjct 16025117 CTCCATGGCATCAATATCACCATAAAGTGCTTCTAACCCCGCAGCCATTTCCTTCTCTCC 16025176 Query 9175 T 9175 | Sbjct 16025177 T 16025177 Score = 156 bits (172), Expect = 6e-33 Identities = 169/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798 || || |||||| |||| ||| ||||||| || || || ||||| || ||||| || || Sbjct 16026630 GTCTGGAACAACCGCTCATCATCCCATTCTGGATGCTCCTGTTTAAGCACATCACACACT 16026689 Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858 ||||||||||| | |||||| || |||||||||||||| | ||| ||||| | |||||| Sbjct 16026690 CTGTTGTGTTCCCGCAGCCAAATTGTGGCGTACATCATCAGACCAGGCACCAGACCAAAG 16026749 Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918 || || | ||||| ||||| ||||| | || || || | || | || | ||| | Sbjct 16026750 ACCTCCTGGCCCACAGCAAACCGCAGGTGTTCAGGAACGTGAGGTGGGTAGATCATCTCG 16026809 Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962 ||||| || |||||||| ||||| ||||||| || || || || Sbjct 16026810 ACCTGAGTATCTTTGACTGTGGGAGGATACACCTCCCCATCGAT 16026853 Score = 125 bits (138), Expect = 1e-23 Identities = 134/177 (76%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 |||||||||||| |||| |||| | |||||||| ||||||||| ||| ||| | || Sbjct 16027713 TCTTACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 16027772 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 |||||| || || |||||||| | ||||| || ||||||| || ||||| ||||| || Sbjct 16027773 AAATTGATGGGTGAAGTGTTGGGCAAAAAATGCAAACATCATATTTGTGCCTTGGGGGTC 16027832 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 || || || | || | | || || ||| |||||||||| | ||||||| || || Sbjct 16027833 AGGAATGAACTTTCTTCTTAGAAGAAATTTTTCCACAATCTCTTTTGAATCAGGAAG 16027889 Score = 113 bits (124), Expect = 7e-20 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | || || ||||||||| || || || || |||| ||| ||| Sbjct 16028361 TCACCTTTCACACCCATGGGTGTTGGGCAGTCATCAGCCACAGGGGGAAGAGCTCTGGTA 16028420 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 |||||||| ||||| ||||| ||||||||||| || |||||||| || | ||||| Sbjct 16028421 TAATAGGAGAGATTGGAAAAGGCTTCCCAGCTTTTATAGCCATAGTCCACATTGTAAGTT 16028480 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536 || || || ||||||| | ||||||||| Sbjct 16028481 GGTGGGCTCTCAATCAAATGTGACCTGGCT 16028510 Score = 96.9 bits (106), Expect = 5e-15 Identities = 194/286 (68%), Gaps = 4/286 (1%) Strand=Plus/Plus Query 9436 CCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATG 9495 || ||||| || || |||| ||||| || || |||| | || || | | | || Sbjct 16026043 CCAGCAATTTGCCTGCTGAATGATTCCACGAACTGGGTAAGCCCATGTTCCAGTAATATA 16026102 Query 9496 GAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCA 9555 || |||||||| || || || | | || |||| | ||| |||| | || ||| Sbjct 16026103 GAGTTGTTGTAGACAAACTGCTGGAAATTGTACTCCTGGTCATCTATTTGCAAGGTGTCA 16026162 Query 9556 GGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTAC 9615 |||| || | ||||||| ||||||| || || ||||| || || || ||||| ||||| Sbjct 16026163 GGCAGAAGGGGATGCCAGTGGTAGAGTGTGTTAAACTCAGCAGCAATACGGTTTTGGTAT 16026222 Query 9616 TGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGC 9673 || || | ||| ||| || | ||| |||||||| | || | |||||| || || | Sbjct 16026223 TGGAATTGTTGGTT--GAAAAGCAGCTCTGGGTCAAACTTCAGTTTGAAGTGATAGCCAC 16026280 Query 9674 TGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 | | || || ||||| | | || | ||| ||||||||||| || Sbjct 16026281 TCAAGTGTTGTACATAGTCTTCAATCACAATCTTAATGGTTTCTCC 16026326 >seq969 Length=21006342 Score = 91.5 bits (100), Expect = 2e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 8963 TCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGC 9022 || || || || ||||| || ||||| ||| | || || |||||| ||| | | ||| Sbjct 15512119 TCACCACCAAATGTGCTTGGCTTCCAATACTCTGGAGAACAGATGGGATTCCCTAGGAGG 15512060 Query 9023 CCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGA 9082 || || | ||||| || ||||| | || || || ||||| || ||||||| | ||| Sbjct 15512059 CCCTTGAGAGAAAAAGGGGCCCCAATTTCTATCATACTCTCCCCAAAGATGGAATTTGGA 15512000 Query 9083 CGCGGTTTTTCGACGATGAAGCCA-GTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAG 9141 | || || | || | |||| | | ||| || | || |||| ||| ||||| || Sbjct 15511999 TGGCACTTCTCCA-GAAGCAGCCCCGGGAAGAACTCCAAGGCATCGATGTCTCCATACAG 15511941 Query 9142 GGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACAAG 9180 | ||||||||||| || ||||||||||| ||| |||| Sbjct 15511940 CTCCTCCAACTCGGCTGCCATCTCCTTCTCTCCTGCAAG 15511902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723714620078600