Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq536 138 3e-27 seq1153 136 9e-27 seq566 136 9e-27 seq1477 118 2e-21 seq602 86.0 1e-11 seq825 84.2 5e-11 seq435 84.2 5e-11 >seq536 Length=25944906 Score = 138 bits (152), Expect = 3e-27 Identities = 158/212 (75%), Gaps = 8/212 (4%) Strand=Plus/Minus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 |||| || ||||| |||||||| ||||||||||| | |||||||||| |||| | | Sbjct 23770643 AGTCCCAACACAAGATGGAGAGTGGACTCCTTTTGAATGTTGTAGTCA----AAGTACAT 23770588 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 ||||||||||| ||||| || || ||||| | | |||||| || |||| | |||||| Sbjct 23770587 CCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTCTGCTGATCAGGAAGAGTTCCTT-- 23770530 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 ||||||||||| |||||| ||| | || | || | ||| || || | ||| Sbjct 23770529 --ATCCTGAATCTTGGCCTTCACATTTTCTATTGTATTTGAAGGTTCAACCTCAAGAGTG 23770472 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAAT 199623 || ||||| ||| | ||||||||||| ||||| Sbjct 23770471 ATGGTCTTCCCCATAAGAGTTTTCACGAAAAT 23770440 >seq1153 Length=1501042 Score = 136 bits (150), Expect = 9e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||||||||| |||||||| |||| ||||||||||| || || | ||||| Sbjct 1169583 CAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 1169524 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||| || ||||| ||||| | | ||||||||| || || || || || Sbjct 1169523 TTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 1169464 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| ||| |||| |||||| | | || || |||| ||||| || Sbjct 1169463 CTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 1169404 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| ||||| || || ||||| || || || Sbjct 1169403 CTTGCCCGTCAGGGTCTTCACGAAGATCTG 1169374 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| ||||| |||||||| |||| ||||||||||| || || | |||||| Sbjct 1169354 AGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 1169295 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||| || ||||| ||||| | | ||||||||| || || || || ||| Sbjct 1169294 TCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 1169235 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| |||||| | | || || |||| ||||| ||| Sbjct 1169234 TGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 1169175 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || || ||||| || || || Sbjct 1169174 TTGCCCGTCAGGGTCTTCACGAAGATCTG 1169146 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||||||||| |||||||| |||| ||||||||||| || || | ||||| Sbjct 1171012 CAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 1170953 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||| || ||||| ||||| | | ||||||||| || || || || || Sbjct 1170952 TTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 1170893 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| || |||| |||||| | | || || |||| ||||| || Sbjct 1170892 CTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 1170833 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| ||||| | || ||||| || || || Sbjct 1170832 CTTGCCCGTCAAGGTCTTCACGAAGATCTG 1170803 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| ||||| |||||||| |||| ||||||||||| || || | |||||| Sbjct 1169126 AGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 1169067 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||| || ||||| ||||| | | ||||||||| || || || ||| ||| Sbjct 1169066 TCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCTTTTTCC 1169007 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| || || || | |||||| | | || || |||| ||||| ||| Sbjct 1169006 TGGATCTTCCCTTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 1168947 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| | || ||||| || || || Sbjct 1168946 TTGCCCGTCAAGGTCTTCACGAAGATCTG 1168918 Score = 98.7 bits (108), Expect = 2e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| ||||| |||||||| |||| ||||||||||| || || | |||||| Sbjct 1170783 AGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 1170724 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||| || ||||| ||||| | | ||||||||| || || || || ||| Sbjct 1170723 TCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 1170664 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTC 199569 || ||||| ||| | | |||| |||||| Sbjct 1170663 TGGATCTTCGCCTTGAAGTTCTCGATGGTGTC 1170632 >seq566 Length=2972453 Score = 136 bits (150), Expect = 9e-27 Identities = 162/219 (74%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||| || |||||||| || |||| |||||| |||| | ||| | ||||| Sbjct 801255 CAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATC 801314 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||||| || || |||||||| | ||||||||| || || || || || Sbjct 801315 CTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATC 801374 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||||||| ||||| |||||| | | || || |||| ||||| || Sbjct 801375 CTGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 801434 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 ||| || || || || ||||| || ||||| |||||| Sbjct 801435 CTTGCCGGTCAGGGTCTTCACGAAGATTTG---CATTTT 801470 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || |||||||| ||||| || |||| |||||| |||| | ||| | ||||| Sbjct 801028 AGAACCAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCC 801087 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || |||||||| | ||||||||| || || |||||| ||| Sbjct 801088 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCC 801147 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||| ||||| |||||| | | || || |||| ||||| ||| Sbjct 801148 TGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 801207 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| || || || Sbjct 801208 TTGCCGGTCAGGGTCTTCACGAAGATCTG 801236 >seq1477 Length=8748460 Score = 118 bits (130), Expect = 2e-21 Identities = 157/216 (73%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 199411 AAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCT 199470 |||||||| ||||| || || | |||||||| || | ||||||||||| |||||| | Sbjct 7843781 AAGTCTCA--ACAAGATGAAGTG--GACTCCTTCTGAATGTTGTAGTCAGACAAAGTACG 7843836 Query 199471 TCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 |||||||||||| ||||| || || ||||| | || |||||| | ||| |||| |||| Sbjct 7843837 TCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACTCTGCTGATAAGGAGGAATTTCTTC 7843896 Query 199531 TCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGT 199590 ||| ||||||| |||| ||| | || || | | ||| || || | | Sbjct 7843897 CTTATCCCGAATCTTGGCTTTCATACTTTCTATTGTATCCGAGGGTTCGACCTCAACACT 7843956 Query 199591 GATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| ||||| || || || |||||||||||| |||| Sbjct 7843957 GATGGTCTTTCCTGTAAGGGTTTTCACAAAATTTTG 7843992 >seq602 Length=3264241 Score = 86.0 bits (94), Expect = 1e-11 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| || || || ||| | ||||||||||| | ||||||||||| ||||| Sbjct 2398645 CGAAGTCTCAACACGAGATGAAGAATGGACTCCTTTTGAATGTTGTAGTCAGTCAAAGGA 2398586 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 |||||||| || ||| | || || | ||| || | |||||| | ||| |||| || Sbjct 2398585 TGTCCATCTT-CAATTGCCTGCCAGCAAGGATCAGTCTCTGCTGAACAGGAGGAATTTCT 2398527 Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || ||||||||| | | || || | | | || || | | ||| || || | Sbjct 2398526 TCCTTATCCTGAATCCTGGCCTTTAACATTTCCTATTGTATCCGAGGGTTCCACCTCGAG 2398467 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAAT 199623 ||||| ||||| || | ||||||| ||| |||| Sbjct 2398466 AGTGATGGTCTTCACCCTAAGAGTTTCCACGGAAAT 2398431 >seq825 Length=8281254 Score = 84.2 bits (92), Expect = 5e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 199411 AAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCT 199470 ||||| || | ||| || ||||| ||||||||||| | | | |||||| ||||| Sbjct 4962354 AAGTCGCAACAGAAGATGAAGAGTGGACTCCTTTTGAATGCTACAGTCAGATAAAGTATG 4962413 Query 199471 TCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 |||||||||||| ||||| | | |||||| || | ||||| || ||| | |||||| Sbjct 4962414 TCCATCTTCCAGTTGCTTGCAAGAGAAGATCAGTCTGTGCTGATCAGGAGGAGTTCCTTT 4962473 Query 199531 TCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGT 199590 ||||||||||| ||| || ||| | || || | ||| || || | || Sbjct 4962474 CTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCAACCTCAAGAGT 4962533 Query 199591 GATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| |||| | | | | ||||||| ||||| || Sbjct 4962534 GATGATCTTCCTCATATGGGTTTTCATGAAAATCTG 4962569 >seq435 Length=12339182 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 ||||||| | ||||||||||| |||||| | |||||||||||| ||||| || || |||| Sbjct 10097282 CCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGA 10097341 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | | | |||||| || ||| ||||||| Sbjct 10097342 TCAATCTCTGCTGATCAGGAGGAATTCCT 10097370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178899259804093