Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1153 152 6e-32 seq566 129 7e-25 seq424 86.0 7e-12 >seq1153 Length=1501042 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || || || |||| ||||| || | || |||||| ||||| |||||||| || Sbjct 1169597 CCCCCCCTCAAGCGCAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 1169538 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || |||||| | || || ||||| |||||||| || ||||| | ||||||||| | || Sbjct 1169537 AGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 1169478 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || |||||||||| ||||||| ||||| || | | ||||| || | ||||| Sbjct 1169477 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 1169418 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| ||||||||||| || || || ||||| ||||| Sbjct 1169417 TCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 1169371 Score = 147 bits (162), Expect = 2e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| |||| || |||||| ||||| |||||||| || || |||||| | || || Sbjct 1169351 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 1169292 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||| || ||||| || ||||| | ||||||||| | || | || |||||||||| | Sbjct 1169291 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 1169232 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 |||||| ||||| || | | ||||| || | ||||| |||| |||||||| ||| Sbjct 1169231 ATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 1169172 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||||| || || || ||||| ||||| Sbjct 1169171 CCCGTCAGGGTCTTCACGAAGATCTGCAT 1169143 >seq566 Length=2972453 Score = 129 bits (142), Expect = 7e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || || | ||||| ||||| |||| || ||| || ||||| ||||| || || Sbjct 801241 CCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 801300 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| | || || ||||||||||| || || || | | ||||||||| | || Sbjct 801301 AGAGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGG 801360 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || |||||| ||| |||||| ||| | | | | ||||| || | ||||| Sbjct 801361 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACC 801420 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 |||| |||||||| ||||| ||||| || || || ||||||||||||||| Sbjct 801421 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTTG 801471 Score = 105 bits (116), Expect = 8e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| || || | ||| | |||||||| | || ||| || ||||| ||||| || || Sbjct 801012 GCCACCCCTCAGACGAAGAACCAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGA 801071 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 |||||||| | || || ||||||||||| || || || | | ||||||||| | || Sbjct 801072 AAGAGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 801131 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | || || || ||| |||||| ||| | | | | ||||| || | ||||| Sbjct 801132 GATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCAC 801191 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| ||||| ||||| || || || ||||| ||||| Sbjct 801192 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 801239 >seq424 Length=11562000 Score = 86.0 bits (94), Expect = 7e-12 Identities = 145/209 (69%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| | ||| || ||| || |||||||||||||| || | |||| | |||| || Sbjct 7322004 ACCAGGTTCAAGGTGGACTCTTTCTGGATATTGTAGTCTGAGAAAGTGTGGCCGTCCTCC 7321945 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||| ||||| | | |||| ||| | ||||| ||| | || ||||||||| | Sbjct 7321944 AGCTGTTTGCCCACACAAATCAGACGCCGTTGGTCAAGCGGGATGCCCTCCTTGTCTTGG 7321885 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 || || |||| | || ||| || || | | || || || | |||||||| ||| Sbjct 7321884 ATTTTGGCTTTGACCTTCTCCATGGTATCATTGGTCTCAACGTCAAGGGTGATGGTCTTG 7321825 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || ||| || ||||| || ||||| Sbjct 7321824 CCCATC--CGTCTTCACAAATATCTGCAT 7321798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565227950155080