Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09-
06] 1,479 sequences; 2,391,082,183 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq566 140 3e-28
seq1153 138 1e-27
seq424 111 2e-19
seq516 95.1 1e-14
seq648 89.7 5e-13
seq1344 87.8 2e-12
seq492 86.0 6e-12
seq890 84.2 2e-11
>seq566
Length=2972453
Score = 140 bits (154), Expect = 3e-28
Identities = 171/231 (74%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
||||||||||| ||||| || || || || ||||| ||||||||| | || || ||| ||
Sbjct 801470 AAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 801411
Query 38301 ACCGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359
| |||| | | | ||||| | || | || |||| || || ||||| || ||| | ||
Sbjct 801410 AGTGACACCATCGAAAACG-TGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCAGA 801352
Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419
||| ||| ||||||| | || ||||| |||||||| || | ||||| || || ||
Sbjct 801351 CCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCTGATTA 801292
Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||||||||| || || |||| ||||| |||| |||||| |||| || ||
Sbjct 801291 CAACATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGTCTGAGGGGTGG 801241
Score = 122 bits (134), Expect = 9e-23
Identities = 166/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || || ||||| ||||||||| | || || ||| |||
Sbjct 801239 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 801180
Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | ||||| | || | || |||| || ||||| || || ||| | |||||
Sbjct 801179 GACACCATCGAAAACG-TGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCCCCTGACCA 801121
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||| ||||||| | || ||||| |||||||| || | ||||| || || |||||
Sbjct 801120 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCTGATTACAA 801061
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
|||||| || || | || || ||| |||| || ||| |||| || |||
Sbjct 801060 CATCCAGAAAGAGTCCACTCTCCATCTGGTTCTTCGTCTGAGGGGTGGC 801012
>seq1153
Length=1501042
Score = 138 bits (152), Expect = 1e-27
Identities = 169/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || |||||||| ||||||||| | || || ||| |||
Sbjct 1169371 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1169430
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | || | || |||| ||||| ||||| || ||| | |||||
Sbjct 1169431 GACACCATCGAGAACG-TCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 1169489
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||| || | || | || |||||||||||||| || | ||||||||| ||||||||
Sbjct 1169490 GCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 1169549
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||| ||||| | || || || |||| ||||| ||||| || ||
Sbjct 1169550 CATCCAGAAGGAGTCCACTCTCCACCTGGTCCTGCGCTTGAGGGGGGG 1169597
Score = 127 bits (140), Expect = 2e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || | |||||||| ||||||||| | || || ||| |||
Sbjct 1168915 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1168974
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | |||| || |||| || |||||||| || ||| | |||||
Sbjct 1168975 GACACCATTGAGAATGTCAAAGGGAAGATCCAGGAAAAAGAGGGCATCCCCCCTGACCAG 1169034
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||| || | || | || |||||||||||||| || | ||||||||| |||||||||
Sbjct 1169035 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 1169094
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
||||| ||||| | || ||||| |||| || || | || || |||
Sbjct 1169095 ATCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGGGGGGGC 1169142
Score = 127 bits (140), Expect = 2e-24
Identities = 167/229 (73%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || |||||||| ||||||||| | || || ||| |||
Sbjct 1169143 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1169202
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | || | || |||| ||||| ||||| || ||| | |||||
Sbjct 1169203 GACACCATCGAGAACG-TCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 1169261
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||| || | || | || || ||||||||||| || | ||||||||| ||||||||
Sbjct 1169262 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 1169321
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
|||||| ||||| | || ||||| |||| || || | || || |||
Sbjct 1169322 CATCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGGGGGGGC 1169370
Score = 125 bits (138), Expect = 7e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || | |||||||| ||||||||| | || || ||| |||
Sbjct 1170800 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1170859
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || | || |||| ||||| ||||| || ||| | |||||
Sbjct 1170860 GACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 1170919
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||| || | || | || || ||||||||||| || | ||||||||| |||||||||
Sbjct 1170920 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 1170979
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||||| ||||| | || || || |||| ||||| ||||| || ||
Sbjct 1170980 ATCCAGAAGGAGTCCACTCTCCACCTGGTCCTGCGCTTGAGGGGGGG 1171026
Score = 93.3 bits (102), Expect = 4e-14
Identities = 107/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
|| |||| ||||| ||||| || ||| | ||||| ||| || | || | || || |||
Sbjct 1170656 AAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGAGGTTGATCTTTGCCGGGAAA 1170715
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447
|||||||| || | ||||||||| |||||||||||||| ||||| | || |||||
Sbjct 1170716 CAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAGGAGTCCACTCTGCAC 1170775
Query 38448 TTGGTGCTGCGTTTGAGAGGCGGC 38471
|||| || || | ||||| |||
Sbjct 1170776 CTGGTCCTCCGCCTCAGAGGAGGC 1170799
>seq424
Length=11562000
Score = 111 bits (122), Expect = 2e-19
Identities = 142/192 (74%), Gaps = 4/192 (2%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| ||||| || || ||| | |||||| ||||||||| | ||||| ||| |||
Sbjct 7321798 ATGCAGATATTTGTGAAGACGG--ATGGGCAAGACCATCACCCTTGACGTTGAGACCAAT 7321855
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362
|| | | || | | | | |||| ||||||| ||||| ||||| || ||||| |||||
Sbjct 7321856 GATACCATGGAGAAGGTCAAAGCCAAAATCCAAGACAAGGAGGGCAT-CCCGCTTGACCA 7321914
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
|| ||| || |||| | ||||||||||||||| |||| | ||| || ||||||||
Sbjct 7321915 ACGGCGTCTGATTTGTGTGGGCAAACAGCTGGAGGACGGCCACACTTTCTCAGACTACAA 7321974
Query 38423 CATCCAAAAGGA 38434
||||| || ||
Sbjct 7321975 TATCCAGAAAGA 7321986
>seq516
Length=13457255
Score = 95.1 bits (104), Expect = 1e-14
Identities = 163/228 (71%), Gaps = 8/228 (4%)
Strand=Plus/Plus
Query 38247 CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGAC 38306
||||| || || || || || | |||||| ||||||||| || | |||||| ||| |||
Sbjct 9362472 CAAATCTTTGTGAAGACCCTGATGGGCAAGACCATCACCCTCAAGGTCGAGCCCAGTGAC 9362531
Query 38307 AGCG-TGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCAAC 38364
| | || || | |||| ||||||| ||||| |||| || || ||| ||||| |
Sbjct 9362532 ACCACTGAGAATGGC-AAAGCCAAAATCCAAGACAAGGAGGCCAT-CCTGCCTGACCAGC 9362589
Query 38365 AGCGGCTCATTTACGCGGG-CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||| || |||| || || |||||||||||| |||| ||| | ||| ||| ||||
Sbjct 9362590 AGCATCTGATTTTTGCAGGACAAACAGCTGGAGGACG-CCGCCCTCTCCCAGACCACAAT 9362648
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
||||| | || | || ||||| | |||||| || || |||| |||
Sbjct 9362649 ATCCAGA--GAGTCCACCCTGCACTGGGTGCTACGCCTGCGAGGTGGC 9362694
>seq648
Length=20061788
Score = 89.7 bits (98), Expect = 5e-13
Identities = 150/213 (70%), Gaps = 3/213 (1%)
Strand=Plus/Plus
Query 38247 CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGAC 38306
|| || || || || || || | ||||||| ||| |||| | || ||| || ||| |||
Sbjct 12805314 CAGATCTTTGTGAAGACCCTGATGGGCAAAGCCACCACCCTTGAGGTCAAGCCCAGTGAC 12805373
Query 38307 AGCG-TGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACA 38365
| | || |||| | |||| ||||||| ||||||||||| | || | | ||| ||
Sbjct 12805374 ACCACTGAGAACG-TCAAAGTCAAAATCCAAGACAAAGAGGGCACCCCACCTGTCCAGCA 12805432
Query 38366 GCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACAT 38425
|| | |||| |||||||||||||||||| | | | ||| || |||| ||| ||
Sbjct 12805433 GCATCCGATTTTCGCGGGCAAACAGCTGGAGGCTGGCCACACTCTGTCAGACTGCAATAT 12805492
Query 38426 CCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||| || || | || ||||| ||||||| ||
Sbjct 12805493 CCAGAAAGAGTCCACCCTGCA-CTGGTGCTTCG 12805524
>seq1344
Length=6361600
Score = 87.8 bits (96), Expect = 2e-12
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976
|||| || ||| ||| ||||| ||| || || | ||| ||||| ||||||||||| |
Sbjct 6043431 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCT 6043372
Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036
||||||| ||||| | |||||| || |||||||||| || || || || || || |
Sbjct 6043371 TGAGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 6043312
Query 133037 CCACCAGGCGCTCGCC 133052
|||| | ||||| ||
Sbjct 6043311 CCACAACCCGCTCTCC 6043296
>seq492
Length=10256261
Score = 86.0 bits (94), Expect = 6e-12
Identities = 156/222 (70%), Gaps = 5/222 (2%)
Strand=Plus/Plus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCG-T 38311
|| || || || || |||||||| |||| |||| || |||||| ||| |||| | |
Sbjct 7254419 TTTGTGAAGACCCTGACGGGCAAGACCACCACCCGTGAGGTCGAGCCCAGTGACACCACT 7254478
Query 38312 GCAAACGCTTAAAGAAAAAATCCTCGACAAA-GAGGGAATTCCCGCC-GACCAACAGCGG 38369
| || | | | || ||||||| ||||| ||||| || | ||| ||||||||||
Sbjct 7254479 GAGAATG-TCAGAGCCAAAATCCAAAACAAAAGAGGGCAT-CTCGCGTGACCAACAGCAT 7254536
Query 38370 CTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAA 38429
|| | || | ||||||||||| ||| || | |||| ||| | |||| | |||||
Sbjct 7254537 CTGACTTTTGTGGGCAAACAGCAGGATGATGGCTGCACTCTCTCAGGCTACGATATCCAG 7254596
Query 38430 AAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
|| || ||| ||||| |||||||| || || |||| |||
Sbjct 7254597 AAAGAGTCGAGCCTGCACTTGGTGCTTTGTCTGCGAGGTGGC 7254638
>seq890
Length=2318022
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/213 (69%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || | || | ||| ||||| |||||| || ||| || ||
Sbjct 119437 ATGCAGATCTTTGTGAAGCCTCTGATGGGTAAAACTATCACCCTCACGGTCAAGCCCGGT 119496
Query 38304 GACAGCG-TGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | || || | | ||| ||| ||| ||||| ||||| || || | ||||
Sbjct 119497 GACACCACTGAGAATG-TCAAAACCAAAGTCCAAGACAAGGAGGGCATCCCACCTCACCA 119555
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || |||| ||||||||||||||||| || | ||||| ||| | ||||||
Sbjct 119556 GCAGCGTCTAATTTTTGCGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGGCTACAA 119615
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455
|||| || ||| | || ||| ||||||||
Sbjct 119616 TCTCCAGAAAGAATCCACCTTGCGCTTGGTGCT 119648
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500163553055360
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