Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq566 140 3e-28 seq1153 138 1e-27 seq424 111 2e-19 seq516 95.1 1e-14 seq648 89.7 5e-13 seq1344 87.8 2e-12 seq492 86.0 6e-12 seq890 84.2 2e-11 >seq566 Length=2972453 Score = 140 bits (154), Expect = 3e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| ||||| || || || || ||||| ||||||||| | || || ||| || Sbjct 801470 AAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 801411 Query 38301 ACCGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | | ||||| | || | || |||| || || ||||| || ||| | || Sbjct 801410 AGTGACACCATCGAAAACG-TGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCAGA 801352 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| ||||||| | || ||||| |||||||| || | ||||| || || || Sbjct 801351 CCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCTGATTA 801292 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| || || |||| ||||| |||| |||||| |||| || || Sbjct 801291 CAACATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGTCTGAGGGGTGG 801241 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| Sbjct 801239 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 801180 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | ||||| | || | || |||| || ||||| || || ||| | ||||| Sbjct 801179 GACACCATCGAAAACG-TGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCCCCTGACCA 801121 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| ||||||| | || ||||| |||||||| || | ||||| || || ||||| Sbjct 801120 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCTGATTACAA 801061 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| || || | || || ||| |||| || ||| |||| || ||| Sbjct 801060 CATCCAGAAAGAGTCCACTCTCCATCTGGTTCTTCGTCTGAGGGGTGGC 801012 >seq1153 Length=1501042 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || |||||||| ||||||||| | || || ||| ||| Sbjct 1169371 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1169430 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| || ||| | ||||| Sbjct 1169431 GACACCATCGAGAACG-TCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 1169489 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | || |||||||||||||| || | ||||||||| |||||||| Sbjct 1169490 GCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 1169549 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || || || |||| ||||| ||||| || || Sbjct 1169550 CATCCAGAAGGAGTCCACTCTCCACCTGGTCCTGCGCTTGAGGGGGGG 1169597 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | |||||||| ||||||||| | || || ||| ||| Sbjct 1168915 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1168974 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | |||| || |||| || |||||||| || ||| | ||||| Sbjct 1168975 GACACCATTGAGAATGTCAAAGGGAAGATCCAGGAAAAAGAGGGCATCCCCCCTGACCAG 1169034 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | || |||||||||||||| || | ||||||||| ||||||||| Sbjct 1169035 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 1169094 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| | || ||||| |||| || || | || || ||| Sbjct 1169095 ATCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGGGGGGGC 1169142 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || |||||||| ||||||||| | || || ||| ||| Sbjct 1169143 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1169202 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| || ||| | ||||| Sbjct 1169203 GACACCATCGAGAACG-TCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 1169261 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | || || ||||||||||| || | ||||||||| |||||||| Sbjct 1169262 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 1169321 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || ||||| |||| || || | || || ||| Sbjct 1169322 CATCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGGGGGGGC 1169370 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | |||||||| ||||||||| | || || ||| ||| Sbjct 1170800 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1170859 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| ||||| || ||| | ||||| Sbjct 1170860 GACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 1170919 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | || || ||||||||||| || | ||||||||| ||||||||| Sbjct 1170920 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 1170979 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| | || || || |||| ||||| ||||| || || Sbjct 1170980 ATCCAGAAGGAGTCCACTCTCCACCTGGTCCTGCGCTTGAGGGGGGG 1171026 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| ||||| || ||| | ||||| ||| || | || | || || ||| Sbjct 1170656 AAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGAGGTTGATCTTTGCCGGGAAA 1170715 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 |||||||| || | ||||||||| |||||||||||||| ||||| | || ||||| Sbjct 1170716 CAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAGGAGTCCACTCTGCAC 1170775 Query 38448 TTGGTGCTGCGTTTGAGAGGCGGC 38471 |||| || || | ||||| ||| Sbjct 1170776 CTGGTCCTCCGCCTCAGAGGAGGC 1170799 >seq424 Length=11562000 Score = 111 bits (122), Expect = 2e-19 Identities = 142/192 (74%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| ||||| || || ||| | |||||| ||||||||| | ||||| ||| ||| Sbjct 7321798 ATGCAGATATTTGTGAAGACGG--ATGGGCAAGACCATCACCCTTGACGTTGAGACCAAT 7321855 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 || | | || | | | | |||| ||||||| ||||| ||||| || ||||| ||||| Sbjct 7321856 GATACCATGGAGAAGGTCAAAGCCAAAATCCAAGACAAGGAGGGCAT-CCCGCTTGACCA 7321914 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || ||| || |||| | ||||||||||||||| |||| | ||| || |||||||| Sbjct 7321915 ACGGCGTCTGATTTGTGTGGGCAAACAGCTGGAGGACGGCCACACTTTCTCAGACTACAA 7321974 Query 38423 CATCCAAAAGGA 38434 ||||| || || Sbjct 7321975 TATCCAGAAAGA 7321986 >seq516 Length=13457255 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/228 (71%), Gaps = 8/228 (4%) Strand=Plus/Plus Query 38247 CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGAC 38306 ||||| || || || || || | |||||| ||||||||| || | |||||| ||| ||| Sbjct 9362472 CAAATCTTTGTGAAGACCCTGATGGGCAAGACCATCACCCTCAAGGTCGAGCCCAGTGAC 9362531 Query 38307 AGCG-TGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCAAC 38364 | | || || | |||| ||||||| ||||| |||| || || ||| ||||| | Sbjct 9362532 ACCACTGAGAATGGC-AAAGCCAAAATCCAAGACAAGGAGGCCAT-CCTGCCTGACCAGC 9362589 Query 38365 AGCGGCTCATTTACGCGGG-CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || |||| || || |||||||||||| |||| ||| | ||| ||| |||| Sbjct 9362590 AGCATCTGATTTTTGCAGGACAAACAGCTGGAGGACG-CCGCCCTCTCCCAGACCACAAT 9362648 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| | || | || ||||| | |||||| || || |||| ||| Sbjct 9362649 ATCCAGA--GAGTCCACCCTGCACTGGGTGCTACGCCTGCGAGGTGGC 9362694 >seq648 Length=20061788 Score = 89.7 bits (98), Expect = 5e-13 Identities = 150/213 (70%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 38247 CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGAC 38306 || || || || || || || | ||||||| ||| |||| | || ||| || ||| ||| Sbjct 12805314 CAGATCTTTGTGAAGACCCTGATGGGCAAAGCCACCACCCTTGAGGTCAAGCCCAGTGAC 12805373 Query 38307 AGCG-TGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACA 38365 | | || |||| | |||| ||||||| ||||||||||| | || | | ||| || Sbjct 12805374 ACCACTGAGAACG-TCAAAGTCAAAATCCAAGACAAAGAGGGCACCCCACCTGTCCAGCA 12805432 Query 38366 GCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACAT 38425 || | |||| |||||||||||||||||| | | | ||| || |||| ||| || Sbjct 12805433 GCATCCGATTTTCGCGGGCAAACAGCTGGAGGCTGGCCACACTCTGTCAGACTGCAATAT 12805492 Query 38426 CCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||| || || | || ||||| ||||||| || Sbjct 12805493 CCAGAAAGAGTCCACCCTGCA-CTGGTGCTTCG 12805524 >seq1344 Length=6361600 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| || ||| ||| ||||| ||| || || | ||| ||||| ||||||||||| | Sbjct 6043431 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCT 6043372 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 ||||||| ||||| | |||||| || |||||||||| || || || || || || | Sbjct 6043371 TGAGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 6043312 Query 133037 CCACCAGGCGCTCGCC 133052 |||| | ||||| || Sbjct 6043311 CCACAACCCGCTCTCC 6043296 >seq492 Length=10256261 Score = 86.0 bits (94), Expect = 6e-12 Identities = 156/222 (70%), Gaps = 5/222 (2%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCG-T 38311 || || || || || |||||||| |||| |||| || |||||| ||| |||| | | Sbjct 7254419 TTTGTGAAGACCCTGACGGGCAAGACCACCACCCGTGAGGTCGAGCCCAGTGACACCACT 7254478 Query 38312 GCAAACGCTTAAAGAAAAAATCCTCGACAAA-GAGGGAATTCCCGCC-GACCAACAGCGG 38369 | || | | | || ||||||| ||||| ||||| || | ||| |||||||||| Sbjct 7254479 GAGAATG-TCAGAGCCAAAATCCAAAACAAAAGAGGGCAT-CTCGCGTGACCAACAGCAT 7254536 Query 38370 CTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAA 38429 || | || | ||||||||||| ||| || | |||| ||| | |||| | ||||| Sbjct 7254537 CTGACTTTTGTGGGCAAACAGCAGGATGATGGCTGCACTCTCTCAGGCTACGATATCCAG 7254596 Query 38430 AAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || || ||| ||||| |||||||| || || |||| ||| Sbjct 7254597 AAAGAGTCGAGCCTGCACTTGGTGCTTTGTCTGCGAGGTGGC 7254638 >seq890 Length=2318022 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || | || | ||| ||||| |||||| || ||| || || Sbjct 119437 ATGCAGATCTTTGTGAAGCCTCTGATGGGTAAAACTATCACCCTCACGGTCAAGCCCGGT 119496 Query 38304 GACAGCG-TGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || || | | ||| ||| ||| ||||| ||||| || || | |||| Sbjct 119497 GACACCACTGAGAATG-TCAAAACCAAAGTCCAAGACAAGGAGGGCATCCCACCTCACCA 119555 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || |||| ||||||||||||||||| || | ||||| ||| | |||||| Sbjct 119556 GCAGCGTCTAATTTTTGCGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGGCTACAA 119615 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 |||| || ||| | || ||| |||||||| Sbjct 119616 TCTCCAGAAAGAATCCACCTTGCGCTTGGTGCT 119648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500163553055360