Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1436 183 1e-40 seq1204 143 1e-28 seq969 105 3e-17 seq523 93.3 2e-13 seq582 87.8 7e-12 >seq1436 Length=545704 Score = 183 bits (202), Expect = 1e-40 Identities = 462/697 (66%), Gaps = 13/697 (2%) Strand=Plus/Plus Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973 || ||||| || || || || ||||||| ||||| || || || | ||| | || || Sbjct 189418 GCCATTGGCATCGACCTGGGCACCACCTACTCATGCGTGGGGGTGTTCCAGCACGGTAAG 189477 Query 450974 GTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGT----TT 451029 ||||| || || || |||||||| || || || || || || | || || || Sbjct 189478 GTAGAGATCATTGCCAATGACCAGGGCAACCGCACCACCCC--CA--GCTATGTGGCCTT 189533 Query 451030 TACGGATTCAGAAAGACTTTTAGGGCAAGCTGCTAA-ATCAATGGTAAATTCAAATGCCA 451088 || ||| | ||| | || | ||| | || || || | | | |||| ||| || Sbjct 189534 CACCGATACGGAACGGCTCATTGGGGATGCGGCCAAGAACCA-GGTAGCCATGAATCCCC 189592 Query 451089 AAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTAC 451148 | ||||| || | |||||| |||||| | |||||| | | | | ||||| | || | Sbjct 189593 AGAACACTGTCTTTGATGCCAAACGTCTGATTGGCAGGAAATTTAATGATCCTGTAGTGC 189652 Query 451149 AAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTC 451208 | ||| | ||| || ||| | | ||| | ||| || ||| |||||| | | Sbjct 189653 AGGCAGATATGAAACACTGGCCTTTTCAAGTAATCAATGAAGGAGGCAAGCCCAAGGTAA 189712 Query 451209 AAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTC 451268 ||| || ||||| || | ||| |||| |||||| ||||| || |||||||| | Sbjct 189713 CAGTGTCCTACAAAGGGGAGAAAAAAGCTTTCTATCCTGAGGAAATCTCTTCTATGGTAC 189772 Query 451269 TTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAA 451328 | || || ||||| || || || || | | | || || || || |||| || | Sbjct 189773 TGACAAAGATGAAGGAGACTGCTGAGGCCTTTTTGGGCCACCCTGTCACCAATGCTGTGA 189832 Query 451329 TTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATA 451388 | ||||| || ||||||||||||||| | || || ||||| || || |||||||| | Sbjct 189833 TAACTGTGCCAGCTTATTTCAATGATTCTCAGCGTCAAGCCACCAAGGATGCAGGTGTGA 189892 Query 451389 TTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATG 451448 |||| ||| | ||||| || ||||||| |||||||| ||||| ||||| | ||||||| Sbjct 189893 TTGCGGGTCTGAATGTGCTAAGAATTATCAATGAACCCACAGCTGCTGCCATTGCATATG 189952 Query 451449 GACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAG 451508 | ||| ||| | || | ||| | || | || | ||||| | ||||||| Sbjct 189953 GCTTAGATAAAGC---AGGTCAGGGAGAGCGACATGTCTTGATCTTTGACCTGGGTGGAG 190009 Query 451509 GAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCA 451568 |||| |||| || | || | || || ||||| | |||||||||||||| || Sbjct 190010 GAACATTTGATGTGTCCATCCTGACCATAGATGATGGAATCTTTGAAGTAAAGGCCACAG 190069 Query 451569 ATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 ||| || || || || || || || || |||| || Sbjct 190070 CTGGGGACACCCACCTTGGTGGAGAGGACTTTGACAA 190106 >seq1204 Length=1977916 Score = 143 bits (158), Expect = 1e-28 Identities = 342/512 (67%), Gaps = 4/512 (1%) Strand=Plus/Minus Query 451981 TAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCT 452040 ||||||| | || |||||||||||||| || |||||||| || || || ||||| || || Sbjct 41079 TAAGAGCATCAACCCTGATGAAGCTGTCGCTTATGGTGCAGCTGTCCAGGCAGCCATCCT 41020 Query 452041 AACAGG-TTCAGATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTAT 452099 | || || || |||||| | |||| | ||| | | || || || || || | Sbjct 41019 TCCTGGAGACAAAT-CTGAAAATGTTCAAGATTTGCTGCTGTTGGAGGTCACTCCCCTTT 40961 Query 452100 CTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGAACTTCTA 452159 ||||||| ||||||| ||||||||| | |||||| | | || || | || | | Sbjct 40960 CTCTTGGCATTGAAACTGCTGGTGGAGTCATGACTGTTCTCATCAAGCACAATTCTACCA 40901 Query 452160 TTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAAGTGATAACCAACCAGGTGTAACTA 452219 ||||| |||| ||| || || || | ||| ||| ||||| || ||||| | Sbjct 40900 TTCCTACTAAACAGACCCAGACCTTCACTACCTACTCTGACAACCAGCCTGGTGTGCTCA 40841 Query 452220 TTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATTTA 452279 |||| || | |||||| || ||||| ||||| ||||| || ||| || | ||| Sbjct 40840 TTCAGGTTTATGAAGGTGAGCGTGCCATGACCAAGGATAACAACCTACTTGGCAAGTTTG 40781 Query 452280 CTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGATG 452339 || || ||| | |||| || || |||||| ||||| |||||| |||| Sbjct 40780 AACTCACAGGCATACGTCCTGCCCCCCATGGCGTTCCTCAGATTGAGGTTACCTTTGATA 40721 Query 452340 TTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGAAAAATCATCTGGAAAATCAGAA- 452398 ||||||| ||||| ||||| ||||| ||| || || || | |||||| |||| Sbjct 40720 TTGATGCTAATGGCATTCTCAATGTCTCTGCTGTGGATAAGAGTACAGGAAAA-GAGAAT 40662 Query 452399 AAAATTACAATTACTAATGATAAAAACCGTTTATCTAAAGAAGATATTGAAAAAATGGTA 452458 || || || || || || | ||| || || || ||||| ||||| ||||| Sbjct 40661 AAGATCACCATCACAAACAACAAAGGTCGCTTGAGCAAGGAAGACATTGAGCTCATGGTC 40602 Query 452459 GATGAAGCAGAAAAATTCAAGGATGATGATGA 452490 | ||||| || || | ||| | || ||||| Sbjct 40601 CAGGAAGCTGAGAAGTACAAAGCAGAAGATGA 40570 Score = 125 bits (138), Expect = 3e-23 Identities = 452/700 (65%), Gaps = 23/700 (3%) Strand=Plus/Minus Query 450919 TGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCA--AAATGGAAATGTA 450976 ||| |||| |||||| ||||||| || ||||| |||| | | | | | |||| || Sbjct 42144 TGGCATTGGTCTTGGCACCACCTACTCTTGTGTGGGTGCCTTCTAGCACAGGGAAGTG-- 42087 Query 450977 GAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACGGAT 451036 ||||| || || ||||| || ||| |||| || || | ||| ||||| || Sbjct 42086 GAAATAATTGCCAATGATCAGGGAAACTGAACCACCCCAAGTTATGTAGCCTTTACTGAC 42027 Query 451037 TCAGAAAGACTTTTAGGGCAAGCTGCTAA--ATCAA-TGGTAAATTCAAATGCCAAAAAC 451093 | ||| || | | || | ||||| || ||||| | | || | || ||| ||| Sbjct 42026 ACTGAACGATTGATCGGTGATGCTGCAAAGAATCAAGTTGCAA---CGAACCCCACCAAC 41970 Query 451094 ACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAAAA 451153 ||||| | |||||| ||||| | ||||| ||| | || |||| | ||| ||| Sbjct 41969 ACAGTTTTTGATGCCAAACGCCTGATTGGGCGTGGATTCGACGATGCTGTTGTCCAATCT 41910 Query 451154 GAGAAAAAATTCTTTTC--TTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAAG 451211 || | || || | | ||| || || ||| | || | |||| | | |||| Sbjct 41909 GATATGAAGCACTGGCCCCTCATGGTG--GTGAATGATGCTGGCAGGCCCAAGGTCCAAG 41852 Query 451212 TAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTA 451271 || | || || || || || |||| ||| ||| || || | || ||||||||| | | Sbjct 41851 TAGAATACAAGGGAGAGACCAAAAGTTTCTATCCAGAGGAGGTGTCTTCTATGGTTTTGA 41792 Query 451272 CTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTA 451331 | || || || |||| |||| || |||| | ||||| |||| ||| | | Sbjct 41791 CAAAGATAAAGGAAATCACAGAGGCTTACCTTGGGAAGACTGTTACCAATGCTGTAGTCA 41732 Query 451332 CTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTG 451391 | || || || ||||| || |||| || || || || || |||||||| ||| ||||| Sbjct 41731 CAGTACCTGCCTATTTTAACAATGCTCAGCGTCAGGCTACCAAAGATGCTGGAACTATTG 41672 Query 451392 CTGGTTTAAATGTTCTTCGAATTATTAATGAAC------CTACAGCAGCTGCTCTAGCAT 451445 ||||| | ||||| ||| |||| || || | || | || || |||||| | || | Sbjct 41671 CTGGTCTTAATGTACTTTGAATCATCAAAGTACAGCAGCCAACTGCTGCTGCTATTGCTT 41612 Query 451446 ATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTG 451505 |||| ||| ||| || | || |||| ||| | | | ||||| || || | Sbjct 41611 ATGGCTTAGAGAAA---AAGGTTGGAGCCGAAAGGAATGTGCTGATCTTTGACTTGGGAG 41555 Query 451506 GAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAA 451565 | || ||| |||| || | || | |||||||||||| | ||||| || || | | Sbjct 41554 GTGGCACTTTTGATGTGTCAATCCTCACTATTGAAGATGGGATCTTTGAGGTCAAATCTA 41495 Query 451566 CCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 | ||| || || || |||| || ||||| |||| || Sbjct 41494 CTGCTGGAGACACCCACTTAGGTGGAGAAGACTTTGACAA 41455 >seq969 Length=21006342 Score = 105 bits (116), Expect = 3e-17 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| ||||||| ||||||| || || |||||||||||||| ||||| || ||||| Sbjct 18175858 GTTACCCATGCAGTTGTTACTGTACCAGCCTATTTCAATGATGCCCAACGCCAGGCAACC 18175799 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425 |||||||| ||| ||||||||| || |||||| | |||| || ||||| || Sbjct 18175798 AAAGATGCTGGAACTATTGCTGGATTGAATGTTATGAGAATCATCAATGAGCC 18175746 >seq523 Length=9440060 Score = 93.3 bits (102), Expect = 2e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426 || ||||||||||| || || || |||| |||| || ||||| | |||||||||||| Sbjct 3165430 GCCACTAAAGATGCTGGCCAGATATCTGGACTAAACGTGCTTCGGGTAATTAATGAACCT 3165371 Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGA 451467 ||||| |||||||| || ||||| |||| |||||| |||| Sbjct 3165370 ACAGCTGCTGCTCTGGCTTATGGTCTAGACAAATCAGAAGA 3165330 >seq582 Length=7536170 Score = 87.8 bits (96), Expect = 7e-12 Identities = 248/380 (65%), Gaps = 6/380 (2%) Strand=Plus/Minus Query 451226 GAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAA 451285 || || |||| ||| ||| || || | | ||||||||| | || || ||||| ||| Sbjct 4528081 GAGACCAAAAGTTTCTGTCCAGAGGAGGTGCCCTCTATGGTTTTGACAAAGATGAAGGAA 4528022 Query 451286 ACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTAT 451345 || |||| || |||| | |||| |||| ||| | || || || || ||| Sbjct 4528021 ACCACAGAGGCTTACCTTGGGAAGACTGTTAACAATGCTGTAGTCACAGTACCTGCCTAT 4527962 Query 451346 TTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTT 451405 || || | | || | | || || ||| |||| ||| ||||||||||| | ||||| Sbjct 4527961 TTTAACAACTCTCAGCATTAGGCTACCAAACATGCTGGAAATATTGCTGGTCTTAATGTA 4527902 Query 451406 CTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAA 451465 || ||||| || | ||| || || || |||||| | || ||||| ||| || ||| Sbjct 4527901 CTACGAATCATCAGTGAGCCAACTGCTGCTGCTATTGCTTATGGCTTAGACAA---AAAG 4527845 Query 451466 GAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCT 451525 | || |||| ||| | | | ||||| || || || || ||| |||| || Sbjct 4527844 GTTGGAGCTGAAAGGAATGTGCTGATCTTTGACTTGGGAGGTGGCACTTTTGATGGGTCA 4527785 Query 451526 GTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTA 451585 | | | | |||||||||| | ||||| || ||| | | ||| || || || || Sbjct 4527784 ATCCCCACTACTGAAGATGGGATCTTTGAGGTCAAGTCTGC---TGGAGACACCCACTTA 4527728 Query 451586 GGAGGTGAAGATATTGATAA 451605 || || ||||| |||| || Sbjct 4527727 GGTGGAGAAGACTTTGACAA 4527708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975680960753732