Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq566 138 3e-27 seq1153 122 2e-22 seq536 98.7 2e-15 seq648 89.7 1e-12 seq1477 86.0 1e-11 seq825 84.2 5e-11 >seq566 Length=2972453 Score = 138 bits (152), Expect = 3e-27 Identities = 159/213 (75%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| || || |||||||||||||| || || |||||||| | |||||| | ||||| || Sbjct 801030 AACCAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCCTC 801089 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| ||||| ||||| || | || ||||| || || ||||||||||| || || Sbjct 801090 CAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTG 801149 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGT 195107 || || ||| ||||| || |||||||| ||| ||||| || ||||| | || Sbjct 801150 GATCTTGGCCTTCACGTTTTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGT 801206 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || |||| || || ||||| | ||||| Sbjct 801207 CTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 801239 >seq1153 Length=1501042 Score = 122 bits (134), Expect = 2e-22 Identities = 155/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||||||||| || || || ||||| || | || || | ||||||||| Sbjct 1169123 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 1169064 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || || ||||| | | || ||||| || || ||||| ||||| || || Sbjct 1169063 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCTTTTTCCTGG 1169004 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||||| |||||||||||||| ||| ||||| || ||||| | ||| Sbjct 1169003 ATCTTCCCTTTGACATTCTCAATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTC 1168947 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || ||||| || || ||||| | ||||| Sbjct 1168946 TTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 1168915 Score = 122 bits (134), Expect = 2e-22 Identities = 155/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||||||||| || || || ||||| || | || || | ||||||||| Sbjct 1169351 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 1169292 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || || ||||| | | || ||||| || || ||||| || ||||| || Sbjct 1169291 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 1169232 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||||||||| |||||||| ||| ||||| || ||||| | ||| Sbjct 1169231 ATCTTCGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTC 1169175 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || ||||| | ||||| Sbjct 1169174 TTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 1169143 Score = 122 bits (134), Expect = 2e-22 Identities = 155/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||||||||| || || || ||||| || | || || | ||||||||| Sbjct 1169579 ACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 1169520 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || || ||||| | | || ||||| || || ||||| || ||||| || Sbjct 1169519 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 1169460 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||||||||| |||||||| ||| ||||| || ||||| | ||| Sbjct 1169459 ATCTTCGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTC 1169403 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || ||||| | ||||| Sbjct 1169402 TTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 1169371 Score = 122 bits (134), Expect = 2e-22 Identities = 155/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||||||||| || || || ||||| || | || || | ||||||||| Sbjct 1171008 ACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 1170949 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || || ||||| | | || ||||| || || ||||| || ||||| || Sbjct 1170948 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 1170889 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||| ||||| |||||||| ||| ||||| || ||||| | ||| Sbjct 1170888 ATCTTCGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTC 1170832 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || ||||| || || ||||| | ||||| Sbjct 1170831 TTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 1170800 Score = 104 bits (114), Expect = 5e-17 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | || ||||| ||||||||||| || || || ||||| || | || || Sbjct 1170793 TCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 1170734 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||||||| ||||| || || || ||||| | | || ||||| || || ||||| Sbjct 1170733 GCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCC 1170674 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 || ||||| || || || ||||| |||||| |||||||| Sbjct 1170673 CTCCTTGTCCTGGATCTTCGCCTTGAAGTTCTCGATGGTGTC 1170632 >seq536 Length=25944906 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/210 (71%), Gaps = 8/210 (4%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||||| ||| ||||| || ||||||||||| |||||||| ||||| || | ||| | Sbjct 23770644 GAGTCCCAACACAAGATGGAGAGTGGACTCCTTTTGAATGTTGTAGTC----AAAGTACA 23770589 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| || ||||| || || ||||| ||| || || || ||||| | ||| Sbjct 23770588 TCCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTCTGCTGATC---AGGAA-GAGTTC 23770533 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || || ||||| || ||| || || || || || | ||| ||| || ||||| || Sbjct 23770532 CTTATCCTGAATCTTGGCCTTCACATTTTCTATTGTATTTGAAGGTTCAACCTCAAGAGT 23770473 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 | ||||| || | | |||||| ||||| Sbjct 23770472 GATGGTCTTCCCCATAAGAGTTTTCACGAA 23770443 >seq648 Length=20061788 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||||||||||| || |||||| | || | ||||| ||| | || ||||| Sbjct 12805514 GTGCAGGGTGGACTCTTTCTGGATATTGCAGTCTGACAGAGTGTGGCCAGCCTCCAGCTG 12805455 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || ||||| || | | || ||| | || || |||| ||||||||||| ||||| Sbjct 12805454 TTTGCCCGCGAAAATCGGATGCTGCTGGACAGGTGGGGTGCCCTCTTTGTCTTGGATTTT 12805395 Query 195057 TTGCTTGACGTTCTCAATGGTGTC 195080 |||||||||||| ||||||| Sbjct 12805394 GACTTTGACGTTCTCAGTGGTGTC 12805371 >seq1477 Length=8748460 Score = 86.0 bits (94), Expect = 1e-11 Identities = 160/229 (70%), Gaps = 11/229 (5%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| |||| ||||| ||||||| || ||||| ||||| || | | ||| | Sbjct 7843782 AGTCTCAA--CAAGATGAAG--TGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGT 7843837 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || ||||| || || ||||| | | || || | |||||||| |||| Sbjct 7843838 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACTCTGCTGATAAGGAGGAATTTCTTCC 7843897 Query 195043 TTGTCTTGAATTTTTTGCTTG---ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGG 195099 || || |||| || |||| || |||| || || ||||| ||| || |||| Sbjct 7843898 TTATCCCGAATCTTG-GCTTTCATACTTTCT--ATTGTATCCGAGGGTTCGACCTCAACA 7843954 Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTTATGGTT 195148 | | ||||||||||| | ||||| || || |||||| | ||||| Sbjct 7843955 CTGATGGTCTTTCCTGTAAGGGTTTTCACAAAATTTTGCATCT-TGGTT 7844002 >seq825 Length=8281254 Score = 84.2 bits (92), Expect = 5e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| ||| | ||| |||||||||||||| |||||||| | | || | | ||| Sbjct 4962355 AGTCGCAACAGAAGATGAAGAGTGGACTCCTTTTGAATGCTACAGTCAGATAAAGTATGT 4962414 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || ||||| | | |||||| |||| || || || |||||| | |||| Sbjct 4962415 CCATCTTCCAGTTGCTTGCAAGAGAAGATCAGTCTGTGCTGATCAGGAGGAGTTCCTTTC 4962474 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || || ||||| || ||| || || || || || ||| | ||| || ||||| || Sbjct 4962475 TTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCAACCTCAAGAGT 4962533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109460575670393