Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1153 131 1e-25 seq890 96.9 2e-15 seq566 96.9 2e-15 >seq1153 Length=1501042 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || |||||||| | || |||| ||| | ||| || ||||| ||||| ||||| || Sbjct 1169597 CCCCCCCTCAAGCGCAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 1169538 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| ||||||||||| |||||||| || | | |||||||| | || Sbjct 1169537 AGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 1169478 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||||| |||||| |||||| | || | |||| || ||| || Sbjct 1169477 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 1169418 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| ||||| || ||||| || |||||||| ||||||||||| Sbjct 1169417 TCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 1169371 Score = 123 bits (136), Expect = 2e-23 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || |||||||| | || |||| ||| | ||| || ||||| ||||| ||||| || Sbjct 1171026 CCCCCCCTCAAGCGCAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 1170967 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| ||||||||||| |||||||| || | | |||||||| | || Sbjct 1170966 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 1170907 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | ||||||||||| |||||| ||||| || || || | |||| || ||| | Sbjct 1170906 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCCA 1170849 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| ||||| || ||||| | |||||||| ||||||||||| Sbjct 1170848 CCTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 1170800 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || ||| | || |||| ||| Sbjct 1169351 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 1169292 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| |||||||| || | | |||||||| | || | ||||||||||| Sbjct 1169291 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 1169232 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||| |||||| | || | |||| || ||| || || | ||| ||||| || Sbjct 1169231 ATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 1169172 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| || |||||||| ||||||||||| Sbjct 1169171 CCCGTCAGGGTCTTCACGAAGATCTGCAT 1169143 Score = 109 bits (120), Expect = 4e-19 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || ||| | || |||| ||| Sbjct 1169123 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 1169064 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| |||||||| || | | |||||||| | || | ||||| || || Sbjct 1169063 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCTTTTTCCTGG 1169004 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 |||||| |||||| || || || | |||| || ||| || || | ||| ||||| | Sbjct 1169003 ATCTTCCCTTTGAC--ATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCT 1168946 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | ||||| | |||||||| ||||||||||| Sbjct 1168945 TGCCCGTCAAGGTCTTCACGAAGATCTGCAT 1168915 >seq890 Length=2318022 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||| | | ||| ||||||||| | || ||| | || || | || |||| ||| Sbjct 119645 ACCAAGCGCAAGGTGGATTCTTTCTGGAGATTGTAGCCTGAGAGAGTGCGGCCATCCTCC 119586 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| || ||||| ||||| || ||||||| | || | ||||||||||| Sbjct 119585 AGCTGTTTGCCCGCAAAAATTAGACGCTGCTGGTGAGGTGGGATGCCCTCCTTGTCTTGG 119526 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 | || |||||| || || | | ||||||| || || || ||| || |||| Sbjct 119525 ACTTTGGTTTTGAC--ATTCTCAGTGGTGTCACCGGGCTTGACCGTGAGGGTGATAGTTT 119468 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | ||| | |||| |||||||||||||||||| Sbjct 119467 TACCCATCAGAGGCTTCACAAAGATCTGCAT 119437 >seq566 Length=2972453 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||||| | | ||||| || | ||| |||||||| ||||| || || ||| Sbjct 801013 CCACCCCTCAGACGAAGAACCAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAA 801072 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| |||||||| || || ||||| || || | |||||||| | || Sbjct 801073 AGAGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 801132 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || || || || ||||| || ||| | | || | |||| || ||| || Sbjct 801133 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACC 801192 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | ||| ||||| || || || || |||||||| |||||||||||| Sbjct 801193 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 801240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324627748377912