Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09-
06] 1,479 sequences; 2,391,082,183 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq485 118 1e-21
seq1344 109 6e-19
seq722 107 2e-18
>seq485
Length=11789088
Score = 118 bits (130), Expect = 1e-21
Identities = 103/128 (80%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044
|| ||||| || || | |||||| ||||| || | |||||||| || |||||||| ||
Sbjct 143827 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTC 143886
Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104
| ||||||||||| |||||| ||||| || ||||| || |||||||| |||||||||||
Sbjct 143887 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATCCCTTCTACAGCTGCAAAAGCC 143946
Query 19105 ACTAGTCT 19112
|| | |||
Sbjct 143947 ACCACTCT 143954
Score = 82.4 bits (90), Expect = 9e-11
Identities = 66/80 (83%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 18672 TTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTC 18731
|||||| || ||||||| ||| ||||||||||| ||||| || || || || || |||
Sbjct 134178 TTGATACTCTGCAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCCAAAGAAATGTTTTC 134237
Query 18732 CATAAAATCAAATGGATTTT 18751
|||||||||||| |||||||
Sbjct 134238 CATAAAATCAAAGGGATTTT 134257
>seq1344
Length=6361600
Score = 109 bits (120), Expect = 6e-19
Identities = 113/146 (77%), Gaps = 4/146 (3%)
Strand=Plus/Minus
Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669
||| || ||| ||||||| | ||||||||||||| || || || ||| ||||||||
Sbjct 6044941 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG--TTGGACTTGACATCACTCCCATC 6044884
Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729
| ||||| ||| | ||||| || |||||||| ||||| || || || | ||| |||
Sbjct 6044883 CTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTC 6044824
Query 18730 TCCATAAAATCAAATGGATTTTTTAC 18755
|||||||| ||||||||||||| |||
Sbjct 6044823 TCCATAAAGTCAAATGGATTTTCTAC 6044798
Score = 102 bits (112), Expect = 9e-17
Identities = 97/124 (78%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| ||||| || || | |||||| ||||| || | ||||||||||| || | ||| |
Sbjct 6043431 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCT 6043372
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| | ||||||||| || || || || ||||||||||| || ||||| ||||| ||||| |
Sbjct 6043371 TGAGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 6043312
Query 19103 CAAC 19106
| ||
Sbjct 6043311 CCAC 6043308
>seq722
Length=1584642
Score = 107 bits (118), Expect = 2e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387
||||||||||| || | ||||| || |||| || || || ||||| ||||| || ||
Sbjct 1256639 TGAAATTCTCCCGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCGATGGAC 1256698
Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447
||||||||||| | ||| ||||||||||| || |||||||| | |||| | ||| ||
Sbjct 1256699 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 1256758
Query 47448 TTTCTTACTCCATA 47461
||||||| |||||
Sbjct 1256759 TTTCTTATACCATA 1256772
Score = 100 bits (110), Expect = 3e-16
Identities = 126/172 (73%), Gaps = 6/172 (3%)
Strand=Plus/Plus
Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109
|||| || ||||| ||||||||||| | ||| ||| |||| || | ||| || || |
Sbjct 1254017 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 1254076
Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169
| | ||| || || |||||||| || |||||||| ||||||||||| | || |||
Sbjct 1254077 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTTTCAGCTGCCATCT---TAAGAACGG 1254133
Query 47170 TT---TGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218
|| |||| |||||||| || || ||||||| ||| || | ||| || ||
Sbjct 1254134 TTTTCTGTGAGATCTCCCACACAGTCTTATAAAGTTGCTTCAGGTCATCAGG 1254185
Score = 91.5 bits (100), Expect = 2e-13
Identities = 103/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659
|| || | ||| || | || ||||| ||||| ||||||| ||||| || | | |||
Sbjct 1273072 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGATTA 1273131
Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719
|||||||||||| ||| ||| ||||| || ||| || || | |||||| | ||| |||
Sbjct 1273132 TATGTTTCAATAGCAGCATCAATATCTTCTTCATGAATCCCCACAGATACCCTCATCAAC 1273191
Query 48720 ATATATTGAGGTCTTTCA 48737
|||| || |||||||||
Sbjct 1273192 ATATGCTGTGGTCTTTCA 1273209
Score = 82.4 bits (90), Expect = 9e-11
Identities = 145/216 (67%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 47540 TCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTC 47599
|||||| || | ||||| || | ||| |||| ||| || || | || || || ||
Sbjct 1262113 TCCTTTGCTGACTGGAGAGCCCTCATAGGTTTCATATGGGCCATGCTCCTTGGCCAGGTC 1262172
Query 47600 ACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCT 47659
||| || |||||||| || | |||||| || |||||||| |||| ||||||| |
Sbjct 1262173 ACAGCTGGCTTCCAAGGCTCCATAATAAATAGTTTCAAAGATTTGCTTGTTTAGTAACTG 1262232
Query 47660 TGCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAAC 47719
||||||| ||||||||||| || | |||||||| ||||| ||
Sbjct 1262233 GGCTTCTGGACTCTCAAAAGGATACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTAC 1262292
Query 47720 ACCAATACCAATTGGTCTATGAGTTTTATTAGAAAA 47755
|| || ||||| || | ||| |||||| || ||
Sbjct 1262293 CCCGATTCCAATGGGGCGATGGCGTTTATTTGATAA 1262328
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562098408013560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |