Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq824 87.8 2e-12 >seq824 Length=577310 Score = 87.8 bits (96), Expect = 2e-12 Identities = 171/252 (68%), Gaps = 8/252 (3%) Strand=Plus/Minus Query 2207 ACTGAAGAACATTCAGGTGAGCAATCACAGTCAACTGTCTCAGAATCGGATCTGCGAGAT 2266 ||||| |||| | | ||| ||| |||| | | || ||||| ||| ||| |||| Sbjct 280994 ACTGAGGAACTTAGAAGTGGCCAACCACACTTGGCGATCCGAGAATGGGACCTGTCAGAT 280935 Query 2267 CCATCTGACCTGTTCTGTCGAGGATCCCAATGACAACATCTCCTTCAAATGGGAGGCCTT 2326 ||| |||||||| ||||| ||| || |||||| ||| | | | ||||||| | Sbjct 280934 CCACCTGACCTGCTCTGTGGAGAATATGAATGACGACAACCTAGTAAGGTGGGAGGTC-- 280877 Query 2327 GGGCAAGACGCTTCT----ACGCGAGCCCAACCTCACGACCTCCTGGGACCCCAGGAACA 2382 ||| || || | | | | || |||||||||| ||||||||||||| ||| Sbjct 280876 --GCAGGAAGCATATCTATAAGAGAAGCCAACCTCACTCTGTCCTGGGACCCCAAGAAGT 280819 Query 2383 GCAGTGAGCAGAACTACACGTGCATCGCCGAAAACGCTGTGAGCAATCTCTCTTTCACGG 2442 ||| || |||| ||||| ||||| || || || |||| ||| | || || ||| | | Sbjct 280818 CCAGCGAAGAGAAGTACACCTGCATAGCTGAGAATCCTGTCAGCCAACTGTCCTTCTCTG 280759 Query 2443 TCTCGGCCCAGA 2454 | || |||||| Sbjct 280758 TTTCCACCCAGA 280747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629271566126840